Drug-Resistance forecasting

This page was last updated on 2025-07-14 09:36:37 UTC

Manually curated articles on Drug-Resistance forecasting

Abstract Title Authors Publication Date Journal/ Conference Citation count Highest h-index View recommendations
visibility_off Genomic and transcriptomic analyses reveal a tandem amplification unit of 11 genes and mutations in mismatch repair genes in methotrexate-resistant HT-29 cells Ahreum Kim, Jong-Yeon Shin, Jeong-Sun Seo 2020-02-27 Experimental & Molecular Medicine, Experimental and Molecular Medicine 5 49 open_in_new
visibility_off Cellular adaptation to cancer therapy along a resistance continuum. Gustavo S. França, Maayan Baron, B. King, Jozef P Bossowski, Alicia Bjornberg, Maayan Pour, A. Rao, Ayushi S. Patel, Selim Misirlioglu, Dalia Barkley, Kwan Ho Tang, Igor Dolgalev, D. A. Liberman, Gal Avital, Felicia Kuperwaser, Marta Chiodin, Douglas A. Levine, T. Papagiannakopoulos, A. Marusyk, T. Lionnet, Itai Yanai 2024-07-10 Nature 46 43 open_in_new
Abstract Title Authors Publication Date Journal/ Conference Citation count Highest h-index View recommendations

Abstract Title Authors Publication Date Journal/Conference Citation count Highest h-index
visibility_off Epigenetic Heritability of Cell Plasticity Drives Cancer Drug Resistance through a One-to-Many Genotype-to-Phenotype Paradigm. É. Oliveira, Salvatore Milite, J. Fernández-Mateos, George D. Cresswell, Erika Yara-Romero, G. Vlachogiannis, Bingjie Chen, Chela James, Lucrezia Patruno, Gianluca Ascolani, Ahmet Acar, Timon Heide, Inma Spiteri, Alex Graudenzi, G. Caravagna, Andrea Bertotti, Trevor A. Graham, Luca Magnani, Nicola Valeri, A. Sottoriva 2025-06-11 Cancer research 0 40
visibility_off A patient-derived organoid model captures fetal-like plasticity in colorectal cancer. Liang Xiong, Ying Xu, Zhaoya Gao, Jingyi Shi, Yunfan Wang, Xiaodong Wang, Wensheng Huang, Ming Li, Longteng Wang, Jun Xu, Cheng Li, Jin Gu, Hongkui Deng, Molong Qu 2025-07-04 Cell research 0 10
visibility_off Targeting Cancer Drug-Tolerant Persister Cells in Minimal Residual Disease Wei Zhang, Sorayut Chattrakarn, Fuhui Chen, Haobin Chai, Mariana Maranga, Jingwei Zhang 2025-05-27 International Journal of Drug Discovery and Pharmacology 0 6
visibility_off Molecular Phenotypic Plasticity Informs Possible Adaptive Change of Triple-Negative Breast Cancer Cells In Vivo Md. Iftehimul, P. Muganda, Robert H. Newman, C. J. Rorie, Scott H. Harrison, M. T. Hossain, Misty D. Thomas, Joseph L. Graves, Dipongkor Saha 2025-06-03 bioRxiv 0 8
visibility_off A Mathematical Model of Persister Cell Plasticity and Its Impact on Adaptive Cancer Therapy Adithya Mathews, D. Basanta 2025-06-27 bioRxiv 0 28
visibility_off Persistent chromatin alterations and gene expression reprogramming follow widespread DNA damage in glioblastoma A. Modrek, Ken Chandradoss, Catherine Do, R. Ezhilarasan, Theodore Sakellaropoulos, Jerome Karp, Yingwen Ding, Ze-Yan Zhang, Melanie Graciani, Giulia Cova, Jennifer E. Phillips-Cremins, Erik P. Sulman, Jane A. Skok 2025-06-24 bioRxiv 0 22
visibility_off Therapeutic targeting of mismatch repair-deficient cancers. Paul Johannet, B. Rousseau, Carol Aghajanian, Mike Foote, Luis A. Diaz 2025-07-10 Nature reviews. Clinical oncology 0 7
visibility_off Actionable biological programs to enhance EGFR-targeted therapy response unveiled by single-cell lineage tracing in clinically relevant lung cancer models Beatrice Gini, W. Tamaki, Johnny Yu, Dora Barbosa, Wei Wu, Yashar K Pourmoghadam, Paul Allegakoen, Donghwa Kim, S. Miglani, Sarah Elmes, V. Olivas, Hani Goodarzi, T. Bivona 2025-05-23 bioRxiv 0 60
visibility_off Drug resistance and tumor heterogeneity: cells and ensembles Ruth Nussinov, B. R. Yavuz, Hyunbum Jang 2025-05-31 Biophysical Reviews 1 48
visibility_off Genome-scale knockout simulation and clustering analysis of drug-resistant breast cancer cells reveal drug sensitization targets. JinA Lim, Hae Deok Jung, S. Park, Moonhyeon Jeon, Da Sol Kim, Ryeongeun Cho, Dohyun Han, Han Suk Ryu, Yoo-Ree Kim, Hyun Uk Kim 2025-07-01 Proceedings of the National Academy of Sciences of the United States of America 0 9
visibility_off Integrated pan-cancer analysis revealed therapeutic targets in the ABC transporter protein family M. B. E. Masood, Iqra Shafique, Muhammad Inam Rafique, Ayesha Iman, Ariba Abbasi, Mehak Rafiq, Uzma Habib 2025-05-30 PLOS One 0 6
visibility_off Conserved cell state dynamics reveal targetable resistance patterns in ovarian high-grade serous carcinoma A. Pirttikoski, Laura Gall-Mas, Wojciech Senkowski, David Fontaneda-Arenas, Matias Marin Falco, E. Erkan, J. Hynninen, K. Wennerberg, Anna Vähärautio 2025-06-18 bioRxiv 0 60
visibility_off Whole Exome Sequencing and Single-Cell DNA Sequencing for Assessment of Clonal Heterogeneity and Evolution in Acute Myeloid Leukemia Sadiksha Adhikari, S. Eldfors, Esa Pitkänen, Markus Vähä-Koskela, C. Heckman 2025-06-01 bioRxiv 0 24
visibility_off TP53 missense–specific transcriptional plasticity drives resistance against cell cycle inhibitors in pancreatic cancer Laura Urbach, Lena Wieland, Frederike Penz, Rebecca Diya Samuel, Stefan Küffer, Lukas Klein, Christof Lenz, Ulrich Sax, Michael Ghadimi, Ramona Schulz-Heddergott, E. Hessmann, V. Ellenrieder, Nelson Dusetti, Shiv K. Singh 2025-07-04 Science Advances 0 23
visibility_off Comprehensive genomic alterations identification and potential shared neoantigens for non-small cell lung cancer immunotherapy. Muchun Zhu, Qing Zhao Ruan, Boyue Zhang, Weiqiang Yin, Run Sheng Ruan 2025-06-01 Journal of Clinical Oncology 0 0
visibility_off Boolean network modeling: The first step toward a new understanding of breast cancer heterogeneity. Lia Medina Montalvo, Thelma Escobedo-Tapia, Osbaldo Resendis-Antonio 2025-06-01 Journal of Clinical Oncology 0 1
visibility_off Targeting DNA helicase CMG complex and NFκB2-driven drug-resistant transcriptional axis to effectively treat KRASG12D-mutated pancreatic cancer Jeffrey Xiao, Joshua Kim, Brandon Park, David J. Baylink, Cedric Kwon, Victoria Tran, Scott Lee, Kevin Codorniz, Laren D Tan, Pamela Lobo Moreno, Amy Schill-Depew, S. Mirshahidi, David de Semir, Diana Hanna, Kiran Naqvi, H. Cao, Chien-Shing Chen, Joanne Xiu, H. Lenz, Hamid Mirshahidi, Mark E. Reeves, Yi Xu 2025-05-26 Experimental Hematology & Oncology 0 22
visibility_off The epigenetic regulator TRIM24 controls melanoma cell dedifferentiation and resistance to treatment in melanoma Simon Durand, Félix Boivin, Roxane M. Pommier, L. Barbollat-Boutrand, Maxime Grimont, Félix Pham, Marion Dufeu, Eric Cumunel, Raphaël Schneider, Anthony Ferrari, Anaïs Eberhardt, Stéphane Dalle, J. Caramel 2025-05-24 bioRxiv 0 18
visibility_off Pangenome-based identification of cryptic pathogenic variants in undiagnosed rare disease patients S. S. Jang, , , , , J. Kim, J. Chae 2025-07-11 None 0 0
visibility_off Spatial transcriptomics reveal PI3K-AKT and metabolic alterations in aggressive, treatment-resistant lactotroph pituitary neuroendocrine tumors F. Martinez-Mendoza, Sergio Andonegui-Elguera, E. Sosa-Eroza, Erick Gomez-Apo, Aurea Escobar-España, Carolina González-Torres, Javier Gaytán-Cervantes, Alam Palma-Guzman, Hugo Torres-Flores, Alberto Moscona-Nissan, S. Hinojosa-Alvarez, J. Hernández-Perez, R. Chavez-Santoscoy, G. Guinto, Gerardo Y. Guinto-Nishimura, B. López-Félix, Erick U. Zepeda-Fernandez, Erick M. Estrada-Estrada, V. Correa-Correa, P. A. González-Zavala, Marco A. Asenscio-Montiel, M. A. García-Vargas, Emmanuel Cantu-Chavez, Rocío Arreola-Rosales, Keiko Taniguchi-Ponciano, D. Marrero-Rodríguez, Moises Mercado 2025-05-19 Acta Neuropathologica Communications 0 17
visibility_off Clonal lineage tracing and parallel multiomics profiling reveal transcriptional diversification induced by ARID1A deficiency Kenichi Miyata, Liying Yang, Yuxiao Yang, Kohei Kumegawa, R. Maruyama 2025-05-28 bioRxiv 0 8
visibility_off Proneural-Mesenchymal hybrid glioblastoma cells are resistant to therapy and dependent on nuclear import. G. Bourmeau, O. Anezo, Jeremy Raymond, A. Ballestín, C. Pichol-Thievend, J. Reveilles, Adrien Thomas, Lin Wang, Melanie Miranda, Eve Moutaux, S. Liva, V. Ribecco, L. Besse, F. Dingli, D. Loew, Céline Vallot, G. Gargiulo, V. Ravi, Kevin Joseph, G. Seano 2025-07-08 Neuro-oncology 0 52
visibility_off The SOX gene superfamily in oncogenesis: unraveling links to ncRNAs, key pathways, chemoresistance, and gene editing approaches. Ammar Yasir Ahmed, Subasini Uthirapathy, Enwa Felix Oghenemaro, R. M, Rohit Kumawat, Yasser Fakri Mustafa, Muthena Kariem, A. J. Kadhim, Shilpa Sharma, M. R. Kumar 2025-05-20 Naunyn-Schmiedeberg's archives of pharmacology 1 20
visibility_off The Effect of X rays on the Expression of Mismatch Repair Genes and Proteins in Lynch Syndrome Associated Human Colorectal Cancer Cell Lines. Mingzhu Sun, L. Cruz-Garcia, Danny Freestone, Kevin Monahan, C. Badie, Yannick Comoglio, Hannah Mancey, J. Moquet, Stephen Barnard 2025-06-20 Radiation research 0 32
visibility_off Clinical approaches to overcome PARP inhibitor resistance Yutian Zou, Hanqi Zhang, Pangzhou Chen, Jiayi Tang, Siwei Yang, Christophe Nicot, Ziyun Guan, Xing Li, Hailin Tang 2025-05-30 Molecular Cancer 0 33
visibility_off Abstract P5-06-09: Evaluating Functional Impacts of GATA3 Mutations in Breast Cancer Using Mesenchymal-to-Epithelial Transition Model Aerica Nagornyuk, Mika Saotome, Nobuki Hida, Alexander Samardzic, Motoki Takaku 2025-06-13 Clinical Cancer Research 0 2
visibility_off What the VAF? A guide to the interpretation of variant allele fraction, percent mosaicism, and copy number in cancer Adam C Smith, Hubert Tsui, Sila Usta, Jose-Mario Capo-Chichi 2025-07-08 Molecular Cytogenetics 0 16
visibility_off Small intestinal neuroendocrine tumors lack early genomic drivers, acquire DNA repair defects and harbor hallmarks of low REST expression Felix Bolduan, Niklas Müller-Bötticher, Olivia Debnath, I. Eichhorn, Yvonne Giesecke, Alexandra Wetzel, S. Sahay, Tomasz Zemojtel, Marten Jaeger, Ute Ungethuem, Christoph Roderburg, C. A. Kunze, Annika Lehmann, David Horst, Frank Tacke, Roland Eils, Bertram Wiedenmann, Michael Sigal, N. Ishaque 2025-05-23 Scientific Reports 0 10
visibility_off Single-Cell Analysis of Meningiomas Reveals Mutation-Associated Tumor and Immune Cell Gene Expression Programs Jose A. Maldonado, Bryce L. Mashimo, Anthony Z. Wang, Rupen Desai, Saad M. Khan, Ngima D Sherpa, Markus I Anzaldua-Campos, Gregory J Zipfel, Albert H. Kim, J. Dowling, Eric C. Leuthardt, Joshua W. Osbun, A. Vellimana, Michael R. Chicoine, Gavin P. Dunn, Allegra A. Petti 2025-05-24 bioRxiv 0 25
visibility_off The adaptive molecular landscape of reprogrammed telomeric sequences Melania D’Angiolo, Benjamin P. Barré, Sakshi Khaiwal, J. Muenzner, Johan Hallin, Matteo De Chiara, Nicolò Tellini, J. Warringer, M. Ralser, Eric Gilson, Gianni Liti 2025-06-27 bioRxiv 0 45
visibility_off High-throughput mapping of spontaneous mitotic crossover and genome instability events with sci-L3-Strand-seq Peter Chovanec, Trevor Ridgley, Yi Yin 2025-05-24 bioRxiv 0 5
visibility_off Genotype-integrated single-cell transcriptome analysis reveals the role of DDX41 pR525H in a patient with myelodysplastic neoplasms Hirotaka Matsui, Akiko Nagamachi, Minori Koizumi, Rei Kudo, Masahiko Ajiro, H. Harada, Yuka Harada, Shigeyuki Shichino, Akihide Yoshimi 2025-07-02 Scientific Reports 0 21
visibility_off Harnessing CRISPR/Cas9 to overcome targeted therapy resistance in non‑small cell lung cancer: Advances and challenges (Review). Jianting Du, Xian Gong, Renjie Huang, Bin Zheng, Chun Chen, Zhang Yang 2025-09-01 Oncology reports 0 2
visibility_off Opposing lineage specifiers induce a protumor hybrid identity state in lung adenocarcinoma. Gabriela Fort, Henry Arnold, S. Camolotto, Kayla T. O'Toole, Rushmeen Tariq, Anna Waters, Katherine Gillis, Eric L. Snyder 2025-06-12 Genes & development 0 11
visibility_off Alternative Splicing in Tumorigenesis and Cancer Therapy Huiping Chen, Jingqun Tang, Juanjuan Xiang 2025-05-29 Biomolecules 1 4
visibility_off Evolutionary Transcriptomics of Cancer Development Roman Ivanov, D. Afonnikov, Yury Matushkin, S. Lashin 2025-05-23 International Journal of Molecular Sciences 0 10
visibility_off Loss of DNA mismatch repair genes leads to acquisition of antibiotic resistance independent of secondary mutations David E. Bautista, Cassidy R. Whitehead, Angela M. Mitchell 2025-06-25 bioRxiv 0 1
visibility_off Extrachromosomal circular DNA drives dynamic genome plasticity: emerging roles in disease progression and clinical potential Bin Shi, Ping Yang, Huaijin Qiao, Daojiang Yu, Shuyu Zhang 2025-05-25 Theranostics 0 4
visibility_off Monitoring the rate and variability of somatic genomic alterations using long-read sequencing Xingyao Chen, Hagai Ligumsky, Charlie Ambrose, Denisse Sibrian, Brian Tran, Daoud Arif, Olga Castellanos, Darren Kessner, Hanyi Luo, Mukta Ubale, Abigail Coleman, Vaidhyanathan Mahaganapathy, Thomas J Jönsson, R. Basho, Jerry S H Lee, Naim Matasci, David B. Agus 2025-06-11 Scientific Reports 0 13
visibility_off Recent advances in novel targeting mechanisms for colorectal cancer. Zhiping Li, Hailing Wang, Yan Liu, Ahequeli Gemingnuer, Yinan Wang, Xin Meng 2025-07-11 Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico 0 1
visibility_off YAP signaling promotes resistance to MEK and AKT inhibition in NF1-related MPNSTs L. E. McGee, J. Grit, Curt J. Essenburg, Sophia Agrusa, Elizabeth A. Tovar, Lisa Turner, K. Becker, J. Zbieg, Anwesha Dey, Jennifer E. Klomp, Jeffrey A. Klomp, Marie Adams, Ian Beddows, Emily Wolfrom, Zhen Fu, A. Hirbe, Carrie R. Graveel, Matthew R. Steensma 2025-06-26 bioRxiv 0 24
visibility_off CRISPR-Based Gene Dependency Screens reveal Mechanism of BRAF Inhibitor Resistance in Anaplastic Thyroid Cancer Shawn Noronha, Yue Liu, Gaga Geneti, Haojian Li, Xiaolin Wu, David Sun, Vaibhavi Gujar, Takashi Furusawa, Alexei Lobanov, Maggie Cam, Lipika R. Pal, N. Nair, Chi-Ping Day, E. Ruppin, Chandrayee Gosh, Jiangnan Hu, Suresh Kumar, T. Andresson, King Chan, Maura O’Neill, Raj Chari, Y. Pommier, J. Rivero, Urbain Weyemi, E. Kebebew, Myriem Boufraqech 2025-06-27 bioRxiv 0 84
visibility_off Parallel and convergent dynamics in the evolution of primary breast and lung adenocarcinomas Robert A. Gatenby, Jamie K Teer, Kenneth Y. Tsai, Joel S. Brown 2025-05-21 Communications Biology 0 4
visibility_off CRISPR in Cancer Biology and Bovine Viral Diarrhea Therapy: Precision Genome Editing at the Frontier of Oncology and Viral Pathogenesis Jindong Gao, Mengdi Zhang, Linjia Gao, Lei Kuang, Tuniyazi. Maimaiti, Ling Zhao, Qinghua Shang, Changmin Hu 2025-05-19 Bio Communications 0 1
visibility_off Lineage-dependent variations in single-cell antibiotic susceptibility reveal the selective inheritance of phenotypic resistance in bacteria Wesley Stine, Tatsuya Akiyama, David S. Weiss, Minsu Kim 2025-05-19 Nature Communications 0 6
visibility_off The Rise of New Targets in Melanoma. Xue Bai, Keith T Flaherty 2025-06-26 The British journal of dermatology 0 2
visibility_off Get ready for short tandem repeats analysis using long reads-the challenges and the state of the art Marija Chaushevska, Karmele Alapont-Celaya, Anne Kristine Schack, Lukasz Krych, M. C. Garrido Navas, Anastasia Krithara, Gjorgji Madjarov 2025-07-02 Frontiers in Genetics 0 13
visibility_off Integrative single-cell and spatial transcriptomics uncover ELK4-mediated mechanisms in NDUFAB1+ tumor cells driving gastric cancer progression, metabolic reprogramming, and immune evasion Yuwei Sun, Wenyang Nie, Zhikai Xiahou, Xiaojing Wang, Wenjia Liu, Zongkai Liu, Zhiheng Lin, Zhaidong Liu 2025-07-04 Frontiers in Immunology 0 9
visibility_off Innate immunity and the NF-κB pathway control prostate stem cell plasticity, reprogramming and tumor initiation. Chen Jiang, Yura Song, S. Rorive, Justine Allard, Elisavet Tika, Zahra Zahedi, C. Dubois, Isabelle Salmon, Alejandro Sifrim, Cédric Blanpain 2025-06-23 Nature cancer 0 36
visibility_off Bladder cancer subtypes exhibit limited plasticity across different microenvironments and in metastases C. Bernardo, Subhayan Chattopadhyay, Natalie Andersson, P. Eriksson, Benjamin Medle, Lena Tran, Nour Al Dain Marzouka, Adam Mattsson, Aymeric Zadoroznyj, Malin Larsson, F. Liedberg, Mattias Höglund, G. Sjödahl 2025-07-02 Experimental Hematology & Oncology 0 40
visibility_off DNA repair and the contribution to chemotherapy resistance K. Nešić, Phoebe Parker, Elizabeth M. Swisher, John J Krais 2025-05-26 Genome Medicine 0 15
visibility_off Senescence-Associated Chromatin Rewiring Promotes Inflammation and Transposable Element Activation A. Dalgarno, Shane A. Evans, M. Kelsey, Thomas A. Nunez, Azucena Rocha, Kelly Clark, J. Sedivy, Nicola Neretti 2025-06-17 bioRxiv 0 8
visibility_off Single-cell transcriptomics uncovers that cell-to-cell communication controls p53 activation L. Castellano, Mark E Robinson, Aleksandra Dabrowska, Niklas Feldhahn, S. Ottaviani, Justin Stebbing 2025-06-02 bioRxiv 0 17
visibility_off Identification of hub genes and potential molecular mechanisms of tumor immune microenvironment-related radiotherapy sensitivity in locally advanced cervical cancer. Yichen Zan, Qing Liu, Yue Yin, Chongxin Guo, Jing Xu, Junhan Gao, Guanglu Dong 2025-06-30 Reproductive sciences 0 6
visibility_off ASXL1 truncating mutations drive leukemic resistance to T cell attack D. McCurry, Zhongqi Ge, Jaehyun Lee, Rishi Pasumarthi, Xiaohong Leng, Thomas Koehnke, O. Pasvolsky, Pranaya Raparla, Vinhkhang N. Nguyen, K. Maurer, Shuqiang Li, K. Livak, Emerie Danson, Bijal Thakkar, Elham Azizi, Robert J. Soiffer, S. Shukla, Ravi Majeti, Jerome Ritz, Catherine J. Wu, J. Molldrem, P. Bachireddy 2025-06-12 bioRxiv 0 59
visibility_off Mechanisms of resistance to VHL loss-induced genetic and pharmacological vulnerabilities Jianfeng Ge, Shoko Hirosue, Saroor A. A. Patel, L. Wesolowski, Anna Dyas, Cissy Yong, Leticia Castillon, Sanne de Haan, J. Drost, Grant D. Stewart, Anna C Obenauf, D. Muñoz-Espín, Sakari Vanharanta 2025-06-20 bioRxiv 0 31
visibility_off Longitudinal single cell RNA-sequencing reveals evolution of micro- and macro-states in chronic myeloid leukemia D. Frankhouser, Dandan Zhao, Yu-Hsuan Fu, Anupam Dey, Ziang Chen, Jihyun Irizarry, Jennifer Rangel Ambriz, S. Branciamore, Denis O’Meally, Lucy Ghoda, Jeffery M. Trent, Stephen J Forman, Adam L. Maclean, Ya-Huei Kuo, Bin Zhang, Russell C. Rockne, Guido Marcucci 2025-05-17 bioRxiv 0 19
visibility_off Characterization of Somatic Mutations in Human tRNA Genes Reveals Tumor-Specific Mutational Loads, and the Generation of tRNA Variants that Alter the Genetic Code Marina Murillo-Recio, Marina Salvadores, Adrián Gabriel Torres, Lina Tsapanou, Aina Vaquer Picó, F. Supek, L. R. de Pouplana 2025-06-09 bioRxiv 0 46
visibility_off Reprogramming of Cellular Plasticity via ETS and MYC Core-regulatory Circuits During Response to MAPK Inhibition in BRAF-mutant Colorectal Cancer H. Lee, Zhao Zheng, Alexey Sorokin, Chi Wut Wong, Stefania Napolitano, S. Chowdhury, Preeti Kanikarla, A. Singh, Veena Kochat, Christopher Bristow, Sanjana Srinivasan, Mike Peoples, Emre Arslan, J. Alshenaifi, O. Villarreal, V. Morris, J. P. Shen, F. Meric-Bernstam, Abhinav K. Jain, Natalie W Fowlkes, Amanda Anderson, D. Menter, A. Saw, Kunal Rai, S. Kopetz 2025-06-20 bioRxiv 0 47
visibility_off From cytogenetics to proteogenomics: new horizons in the study of aneuploidies K. Zadesenets, N. B. Rubtsov 2025-06-01 Vavilov Journal of Genetics and Breeding 0 12
visibility_off The effect of prolonged G-quadruplex stabilization on the functions of human cells Nargis Karatayeva, Lili Hegedűs, Arindam Bhattacharjee, Eszter Németh, Ádám Póti, Lorinc Pongor, Gábor Juhász, David Szuts, Peter Burkovics 2025-06-04 Scientific Reports 0 12
visibility_off Unmasking Human T Cell Receptor Germline Diversity: 335 Novel Alleles Identified in 47 Pangenome Reference Individuals Using the gAIRR Suite Yu-Hsuan Yang, C. Yao, Mao-Jan Lin, Kuan-Ta Huang, Yu-Hui Lin, I-Hsuan Chiu, Sheng-Kai Lai, Chih-Yeh Chen, Ya-Chien Yang, Chia-Lang Hsu, Jacob Shu-Jui Hsu, Chien-Yu Chen, Pei-Lung Chen 2025-05-25 bioRxiv 0 9
visibility_off Multimodal single-cell analyses reveal distinct fusion-regulated transcriptional programs in Ewing sarcoma Olivia G. Waltner, April A. Apfelbaum, Emma D. Wrenn, Shruti S Bhise, Sami B. Kanaan, R. Gladden, Mark A. Mendoza, R. Volden, Z. Kronenberg, Anand G. Patel, Michael A Dyer, J. Sarthy, Elizabeth R. Lawlor, Scott N. Furlan 2025-06-24 bioRxiv 0 10
visibility_off Distinct evolutionary patterns of tumour-immune escape and elimination determined by extracellular matrix architectures. Yijia Fan, Jason T. George 2025-07-01 Journal of the Royal Society, Interface 0 2
visibility_off Amplification of select autonomous HERV loci and surrounding host gene transcription in monocytes from patients with post-acute sequelae of COVID-19 Hyunmin Koo, Casey D. Morrow 2025-06-26 Frontiers in Immunology 0 15
visibility_off Changes in mitochondrial thymidine metabolism and mtDNA copy number during induced pluripotency Hyun Kyu Kim, Yena Song, Minji Kye, Byeongho Yu, Hyungkyu Choi, Sung-Hwan Moon, M. Lee 2025-06-01 Experimental & Molecular Medicine 0 8
visibility_off Quantitative analysis of genetic interactions in human cells from genome-wide CRISPR-Cas9 screens Maximilian Billmann, M. Costanzo, Mahfuzur Rahman, Katherine Chan, Amy Hin Yan Tong, Henry N. Ward, Arshia Z. Hassan, Xiang Zhang, , Thomas Rohde, A. H. Shaw, Catherine Ross, Jolanda van Leeuwen, Michael Aregger, Keith A. Lawson, Barbara Mair, P. Mero, Matej Ušaj, Brenda J. Andrews, Charles Boone, Jason Moffat, Chad L. Myers 2025-06-30 bioRxiv 0 52
visibility_off High Throughput Screening Identifies Small Molecules that Synergize with MRTX1133 Against Acquired Resistant KRAS G12D Mutated CRC Natalie Thielen, Ning Wei, Emiko Nagai, Edward Chu, S. Kitamura, Chaoyuan Kuang 2025-07-02 bioRxiv 0 14
visibility_off Integrating next-generation sequencing and artificial intelligence for the identification and validation of pathogenic variants in colorectal cancer Juliana Rodriguez-Salamanca, Mariana Angulo-Aguado, Sarah Orjuela-Amarillo, Catalina Duque, Diana Carolina Sierra-Díaz, Nora Constanza Contreras Bravo, Carlos Figueroa, Carlos Restrepo, Andrés López-Cortés, Rodrigo Cabrera, Adrien Morel, D. Fonseca-Mendoza 2025-05-19 Frontiers in Oncology 0 8
visibility_off Integrating single-cell with transcriptome-proteome Mendelian randomization reveals colorectal cancer targets Song Wang, Xin Yao, Shenshen Li, Shanshan Wang, Xuyu Huang, Jing Zhou, Xiao Li, Jieying Wen, Weixuan Lan, Yunsi Huang, Hao Li, Yunlong Sun, Xiaoqian Zhao, Qiaoling Chen, Xuedong Han, Ziming Zhu, Xinyue Zhang, Tao Zhang 2025-05-17 Discover Oncology 0 1
visibility_off N6-methyladenosine-modified GPX2 impacts cancer cell stemness and TKI resistance through regulating of redox metabolism Xu Yang, Long Yu, Miaomiao Shao, Huiling Yang, Kangwei Qi, Gaofei He, Lanxin Wang, Di Kong, Jianxin Gu, Xiaolin Xu, Lanxin Wang 2025-06-18 Cell Death & Disease 0 3
visibility_off Loss of chromosome Y shapes the immune cell fate with aging in men A. A. Z. Dawoud, L. Green, O. Rackham 2025-06-02 None 0 0
visibility_off TET3 facilitates bladder cancer progression through targeted modulation of stemness pathways. Zhiren Cai, Yanqi Xie, Luyao Li, Yuhang Zheng, Xianghui Zhou, Guanghua Zhou, Ganping Wang, Xin Zeng 2025-06-26 Medical oncology 0 2
visibility_off X-chromosome upregulation operates on a gene-by-gene basis at RNA and protein levels Ryan N. Allsop, Jeffrey Boeren, Beatrice F. Tan, Sarra Merzouk, Suresh Poovanthingal, W. V. van Ijcken, Jeroen Demmers, Hegias Mira Bontenbal, C. Gontan, J. Gribnau, V. Pasque 2025-06-27 bioRxiv 0 66
visibility_off Targeting CDKs in cancer therapy: advances in PROTACs and molecular glues Hany E. Marei, Khaled Bedair, Anwarul Hasan, Layla Al-mansoori, Alice Gaiba, Andrea Morrione, C. Cenciarelli, Antonio Giordano 2025-06-28 NPJ Precision Oncology 0 30
visibility_off Prognostic and immunological landscape of DDX17 in pan-cancer analysis: a comprehensive study Yu Lei, Xin He, Peng Chen, Yiping Qin, Bin Ge, Yan Liu, Pu Li, Xing Wei 2025-06-17 Discover Oncology 0 2
visibility_off Genetics of growth rate in induced pluripotent stem cells Brian N. Lee, Henry J. Taylor, Filippo Cipriani, Narisu Narisu, Catherine C. Robertson, A. Swift, Neelam Sinha, Tingfen Yan, L. Bonnycastle, Nathan Dale, Annie Butt, Hemant Parsaud, Stefan Semrau, Joshua W Knowles, Ivan Carcamo-Orive, Agnieszka D’Antonio-Chronowska, K. Frazer, Leslie G. Biesecker, S. Noggle, Michael R. Erdos, Dan Paull, Francis S. Collins, D. L. Taylor 2025-07-03 bioRxiv 0 74
visibility_off Novel Avenues for the Detection of Cancer-Associated Viral Genome Integrations Using Long-Read Sequencing Technologies Larissa-Anna Bergmann, Alicja Pacholewska, Michal R. Schweiger 2025-05-22 Cancers 0 13
visibility_off A Super-Enhancer-Driven Transcriptional Regulatory Circuit Underlying Abiraterone Resistance in Castration-Resistant Prostate Cancer. Liling Jiang, Jiamin Wang, Guanjie Peng, Haichuan Zhang, Jinxin Fang, Yingyin Gao, Enzhe Lou, Yangzhou Liu, Wa Ding, Bingyuan Liu, Qiong Mao, Lizhen Jiang, Aochu Liu, Xinyue Li, Shiwen Hu, Qiaomin Ma, Yueyuan Zheng, Zhigang Zhao, Xianping Shi 2025-06-05 Advanced science 0 21
visibility_off Epigenetic Therapeutics: Reprogramming Triple-Negative Breast Cancer into Responsive Subtypes. Wafaa S. Ramadan, Aya Mudhafar Al-Azawi, L. Lozon, Rawan R. Kawaf, Ragheb Alsheikh Zein, Yahia El-Gharib, Raafat El-Awady 2025-07-01 Endocrine-related cancer 0 3
visibility_off Abstract P3-02-26: Sex-biased cancer cells induce endocrine therapy resistance and immune suppression in male breast cancer Zhishuang Gao, Zehao Wang, Yue Zhou, Xiaoting Chen, J. Xue, Jiong Wu 2025-06-13 Clinical Cancer Research 0 19
visibility_off A Network-Driven Framework for Drug Response Precision Prediction of Acute Myeloid Leukemia. Yinyin Wang, Rui Liu, Yinnan Zhang, Xiang Luo, Chengzhuang Yu, Shentong Fang, Ninghua Tan, Jing Tang 2025-07-11 Advanced science 0 5
visibility_off Divergent Evolution of Malignant Subclones Maintains a Balance Between Induced Aggressiveness and Intrinsic Drug Resistance in T Cell Cancer. T. B. Buus, C. K. Vadivel, Maria Gluud, Martin R J Namini, Ziao Zeng, S. Hedebo, Menghong Yin, A. Willerslev-Olsen, Emil M H Pallesen, Lang Yan, E. Blümel, E. U. Ewing, S. Ahmad, Lara P Sorrosal, Carsten Geisler, C. Bonefeld, A. Woetmann, M. Andersen, T. Mustelin, Claus Johansen, Marion Wobser, M. Kamstrup, E. Guenova, Jürgen C. Becker, S. Koralov, R. Bech, N. Ødum 2025-06-16 Cancer discovery 0 45
visibility_off Multimodal profiling unveils a reversible basal-like breast cancer cell state resistant to AKT inhibition Colin D. H. Ratcliffe, Hugh Sparks, G. L. Boezio, Yuriy Alexandrov, Robert P. Jenkins, A. Le Marois, Pablo Soro-Barrio, Rebecca Lee, S. Strohbuecker, Sudeep Joshi, James K. Ellis, Anne-Marie Fortier, Nils Gustafsson, Ana C. Cunha, Morag Park, J. Macrae, A. Serio, J. Briscoe, Andy Riddell, S. Barry, Chris Dunsby, E. Sahai 2025-06-07 bioRxiv 0 12
visibility_off Mechanisms of efficacy of endonuclease inhibition in neuroblastoma. Carla Sampaio, Eric Wu, Madison Cinelli, Erica Steen, Andrew Shiau, Richard Kolodner, Jean Yin Jen Wang, Peter E. Zage 2025-06-01 Journal of Clinical Oncology 0 2
visibility_off An in-frame deletion mutation in MLH1 drives Lynch syndrome-associated colorectal cancer Xiaojuan Lin, Ce Bian, Dongni Liang, Lin Li, Qingqing Tang, Qingli Li 2025-07-11 BMC Cancer 0 1
visibility_off Epigenetic Remodeling of Regulatory Regions by Indicaxanthin Suggests a Shift in Cell Identity Programs in Colorectal Cancer Cells M. Ragusa, C. Gentile, Aldo Nicosia, Salvatore Costa, Sara Volpes, Laura Greco, F. Naselli, Fabio Caradonna 2025-06-24 International Journal of Molecular Sciences 0 12
visibility_off Multi-selective RAS(ON) Inhibition Targets Oncogenic RAS Mutations and Overcomes RAS/MAPK-Mediated Resistance to FLT3 and BCL2 Inhibitors in Acute Myeloid Leukemia Bogdan Popescu, Matthew F. Jones, Madison Piao, Elaine Tran, Andrew Koh, Isabelle Lomeli, C. Peretz, Natalia Murad, Sydney Abelson, Carolina E. Morales, Jose M. Rivera, Y. Pikman, Michael L. Cheng, Aaron C. Logan, Elliot Stieglitz, Catherine C. Smith 2025-06-14 bioRxiv 0 20
visibility_off Post-translational modifications in DNA damage repair: mechanisms underlying temozolomide resistance in glioblastoma. Yike Chen, Kaikai Ding, Shuyu Zheng, Songting Gao, Xiaohui Xu, Haijian Wu, Fengqi Zhou, Yongjie Wang, Jinfang Xu, Chun Wang, C. Ling, Jing Xu, Lin Wang, Qun Wu, G. Giamas, Gao Chen, Jianmin Zhang, Chenggang Yi, Jianxiong Ji 2025-05-26 Oncogene 0 32
visibility_off Discovery of Drugs Targeting Mutant p53 and Progress in Nano-Enabled Therapeutic Strategy for p53-Mutated Cancers Na Zhang, Zhiyuan Jing, Jie Song, Qiyue Liang, Yuxue Xu, Zhaowei Xu, Longping Wen, Pengfei Wei 2025-05-26 Biomolecules 0 3
visibility_off Functional Characterization of LTR12C as Regulators of Germ-Cell-Associated TA-p63 in U87-MG and T98-G In Vitro Models Lucia Meola, Sohum Rajesh Shetty, A. Peschiaroli, Claudio Sette, Camilla Bernardini 2025-06-01 Cells 0 29
visibility_off Structure, Function and Clinical Significance of P53 Protein: A Review Article Farah mumtaz, Hadeel Nasser, Ruqaya Yahya Abd AL-Shaheed, Ali A. Al-fahham 2025-05-28 International Journal of Health & Medical Research 0 4
visibility_off Heterogeneity of Genetic Sequence within Quasi-species of Influenza Virus Revealed by Single-Molecule Sequencing Kenji Tamao, Hiroyuki Noji, K. Tabata 2025-06-19 bioRxiv 0 24
visibility_off Transcriptional Biomarkers in the Diagnosis of Genetic Disorders: Opportunities, Challenges, and Prospects for Application. Lidia N. Nefedova, Tatiana N. Krasnova 2025-06-01 Biochemistry. Biokhimiia 0 1
visibility_off LaGrACE: estimating gene program dysregulation with latent regulatory network. Minxue Jia, Haiyi Mao, Mengli Zhou, Yu-Chih Chen, P.V. Benos 2025-06-30 Molecular systems biology 0 3
visibility_off Breaking Boundaries in Cancer Therapy: Harnessing Chromothripsis- Induced Mutations for Targeted BCL2 Protein Destabilization. Sergey Shityakov, Michael Nosonovsky, Ekaterina V. Skorb, Viacheslav Kravtsov 2025-06-02 Current drug discovery technologies 0 3
visibility_off Double strand breaks drive toxicity in Huntington’s disease mice with or without somatic expansion Aris A. Polyzos, Ana Cheong, Jung Hyun Yoo, Lana Blagec, Zachary D. Nagel, Cynthia T McMurray 2025-05-28 bioRxiv 0 5
visibility_off A transient mutational burst occurs during yeast colony development. Nicolas Agier, Nina Vittorelli, Louis Ollivier, Frédéric Chaux, Alexandre Gillet-Markowska, Samuel O'Donnell, Fanny Pouyet, G. Fischer, Stéphane Delmas 2025-06-09 Molecular systems biology 0 20
visibility_off DIFFERENTIAL ROLES OF RAD18 IN REPRESSING CARCINOGEN- AND ONCOGENE-DRIVEN MUTAGENESIS IN VIVO J. R. Anand, Bethany Wagner, Jitong Lou, Qisheng Gu, Yang Yang, Gaith Droby, Di Wu, Akankshya Jena, Jialiu Xie, Yuri Fedoriw, Bernard E Weissman, Scott E. Williams, Cyrus Vaziri 2025-07-04 bioRxiv 0 11
visibility_off Homologous recombination-DNA damage response defects increase TMB and neoantigen load, but not effector T cell density and clonal diversity in pancreatic cancer Mengyue Lei, Jessica Gai, T. McPhaul, Huijuan Luo, Penghui Lin, Dongbin Liu, Michael Pishvaian, Nicholas J Roberts, Kui Wu, Jin He, Lei Zheng 2025-06-18 Experimental Hematology & Oncology 0 5
visibility_off Use of CRISPR-KO screening to identify novel genes and pathways potentially contributing to cisplatin resistance in testicular germ cell tumors. Laura Matouskova, Kristyna Soffrova, V. Bakardjieva-Mihaylova, J. Stuchlý, L. Boublikova, Karolina Skvarova 2025-06-01 Journal of Clinical Oncology 0 20
visibility_off Metabolite correlation networks reveal complex phenotypes of adaptation-driving mutations Sharon Samuel, Weronika Jasinska, Ezra Sternlicht, Matvey Nikelshparg, D. Kleiner, S. Pilosof, Shimon Bershtein 2025-06-20 bioRxiv 0 18
visibility_off LSINCT5: a pivotal oncogenic long non-coding RNA in cancers. Sharanya K Sritharan, Amar Harris Arifin, S. Salvamani, R. Koh, B. Gunasekaran 2025-06-02 Functional & integrative genomics 0 21
visibility_off Identification of novel genetic mutations for the treatment prognostication of canine lymphoma Josephine Tsang, Qi-Jing Yap, Sheena Kapoor, Jerry Cromarty, Sushmita Sen, Minji Kim, George Courcoubetis, Suhyeon Cho, Deanna Swartzfager, Stanley Park, Sungwon Lim, Ilona Holcomb, Jamin Koo 2025-06-12 NPJ Precision Oncology 0 6
visibility_off MCT1-mediated histone lactylation modulates lung cancer cell sensitivity to T-cell–mediated killing by influencing mitochondrial dysfunction. Q. Xue, W. Peng, Qiong Zhou 2025-06-01 Journal of Clinical Oncology 0 10
visibility_off Single-cell transcriptional dissection illuminates an evolution of immunosuppressive microenvironment during pancreatic ductal adenocarcinoma metastasis Xiaowei Liu, Jinen Song, Meiling Yuan, Fengli Zuo, Huihui Li, Leyi Tang, Xinmin Wang, Xueyan Wang, Qian Xiao, Li Li, Xinyu Liu, Zhankun Yang, Jian-Lin Wu, Jing Jing, Xuelei Ma, Hubing Shi 2025-06-09 Signal Transduction and Targeted Therapy 0 9
visibility_off Epithelial state-transitions permit inflammation-induced tumorigenesis E. Jarman, Anabel Martinez Lyons, Yuelin Yao, Aleksandra Rozyczko, S. Waddell, Andreea Gradinaru, Paula Olaizola, Kyle Davies, Rachel V. Guest, Stephanie Röessler, Timothy J. Kendall, Owen J Sansom, A. Khamseh, Luke Boulter 2025-06-27 bioRxiv 0 9
visibility_off The TP53 tumor suppressor gene: From molecular biology to clinical investigations Panagotis Baliakas, Thierry Soussi 2025-06-16 Journal of Internal Medicine 0 6
visibility_off REpair of heterozygous Mutations independent of Exogenous Donor template with high efficiency (REMEDY) using allele specific CRISPR targeting and HDR enhancers Y. Sezgin, Genesis Snyder, Noushin Saljoughian, Colin Maguire, Ebru Erzurumluoglu Gokalp, Devi Jaganathan, Eleonora S D'Ambrosio, B. Ozes, Gregory Wheeler, Ben Kelly, Mark E. Hester, Zarife Sahenk, S. Vaidyanathan, A. Rashnonejad, Jerry Mendell, Nizar Y. Saad, Roshini S. Abraham, Juhi Bagaitkar, Susan D. Reynolds, Allison Bradbury, M. N. Kararoudi 2025-05-30 bioRxiv 0 9
visibility_off Oncogenic lncRNA transgene transcription modulates epigenetic memory at a naïve chromosomal locus Sweta Sikder, Songjoon Baek, Yamini Dalal, Ganesan Arunkumar 2025-05-19 bioRxiv 0 4
visibility_off Integrative Multi-Omics Analysis Identifies Nuclear Factor I as a Key Driver of Dysregulated Purine Metabolism in DIPG I. Mersich, Sunny Congrove, Matthew Horchar, Roman Caceres, Ranjithmenon Muraleedharan, Janki M Desai, Pankaj B Desai, Larry Sallans, J. Reisz, Abby Grier, Matthew R. Hass, Omer Donmez, Cailing Yin, M. Weirauch, Leah C. Kottyan, Charles B. Stevenson, Claire X. Sun, P. D. de Blank, N. Pillay-Smiley, T. Hummel, N. Elumalai, Ali Tavassoli, Ron Firestein, T. Phoenix, A. D'alessandro, Biplab Dasgupta 2025-05-24 bioRxiv 0 60
visibility_off Genome-Wide CRISPR Screen for Unveiling Radiosensitive and Radioresistant Genes. Yu Yuan, Ziyu Jiang, Yuxin Zeng, Jiawen Tang, Jiang Luo, Conghua Xie, Yan Gong 2025-05-23 Journal of visualized experiments : JoVE 0 4
visibility_off Mitochondrial proteome landscape unveils key insights into melanoma severity and treatment strategies Yonghyo Kim, V. Doma, Uğur Çakır, M. Kuras, L. Betancourt, I. Pla, Aniel Sanchez, Y. Sugihara, R. Appelqvist, Henriett Oskolás, Boram Lee, Jéssica Guedes, G. Monnerat, G. Carneiro, Fábio Nogueira, G. Domont, Johan Malm, Bo Baldetorp, E. Wieslander, I. Németh, A. M. Szasz, R. Hong, Krzysztof Pawłowski, M. Rezeli, H. Kwon, József Timár, David Fenyö, S. Kárpáti, Gyorgy Marko-Varga, Jeovanis Gil 2025-06-23 Cancer 1 27
visibility_off Minimal activation of the p53 DNA damage response by a modular cytosine base editor enables effective multiplexed gene knockout in induced pluripotent stem cells R. Blassberg, Olga Mielczarek, J. Stombaugh, H. Okkenhaug, Alice Abreu Torres, Paul Russell, John Lambourne, Immacolata Porreca 2025-06-07 bioRxiv 0 10
visibility_off Multi-omics analyses of the complex interplay between genetic variants, DNA methylation, and gene expression in COVID-19. Guanjie Chen, Lisa DeRoo, Gabriel Goodney, A. Doumatey, Jie Zhou, A. Adeyemo, C. Rotimi, Amadou Gaye 2025-07-01 American journal of physiology. Heart and circulatory physiology 0 88
visibility_off Decoding the Transcriptional Complexity of the Human BRCA2 DNA Repair Gene Using Hybrid-seq. P. Adamopoulos, Michaela A. Boti, Konstantina Athanasopoulou, P. Tsiakanikas, Glykeria N. Daneva, Andreas Scorilas 2025-07-10 Biochemical genetics 0 16
visibility_off ITX-0121: A therapeutic strategy for transcription-coupled repair-deficient cancers. M. Kelner, Raymond T. Suhandynata, Venkata R. Kotamraju 2025-06-01 Journal of Clinical Oncology 0 3
visibility_off Uncovering minimal pathways in melanoma initiation Hui Xiao, Jessica Shiu, Chi-Fen Chen, Jie Wu, Peijie Zhou, Sahil S. Telang, Rolando Ruiz-Vega, Robert A Edwards, Qing Nie, A. D. Lander, Anand K. Ganesan 2025-06-26 Nature Communications 0 10
visibility_off KSHV reprograms host RNA splicing via FAM50A to activate STAT3 and drive oncogenic cellular transformation Shenyu Sun, Ling Ding, Karla Paniagua, Xian Wang, Yufei Huang, Mario A. Flores, Shou‐Jiang Gao 2025-06-12 mBio 0 5
visibility_off The role of DNA methylation and demethylation in bladder cancer: a focus on therapeutic strategies Wiktoria Strasenburg, Jędrzej Borowczak, Daria Piątkowska, J. Jóźwicki, Dariusz Grzanka 2025-06-26 Frontiers in Oncology 0 6
visibility_off Unraveling the genetic blueprint of doxorubicin-induced cardiotoxicity through systems genetics approaches Buyan-Ochir Orgil, A. Bajpai, Neely R. Alberson, Morgan Lander, Batsaikhan Enkhzul, Hugo R. Martinez, Jeffrey A Towbin, Lu Lu, E. Purevjav 2025-06-03 Cardio-oncology 0 19
visibility_off Non-genetic mechanisms in cancer evolution: senescence, unicellularization, and cycles of stemness recovery V. Niculescu 2025-06-25 Academia Molecular Biology and Genomics 0 8
visibility_off A DNA alteration and methylation co-detection method for clinical purpose Jiyan Yu, Chunhe Yang, Xintao Zhu, Zhankun Wang, Boping Xu, Ye Cai, Jingbo Zhao, Ruijian Guo, Wuzhou Yuan, Jianqing Wang, Bohao Dong, Frank Ron Zheng, Shuang Yang 2025-06-04 EMBO Molecular Medicine 0 0
visibility_off Regulatory Genetic Networks by microRNAs: Exploring Genomic Signatures in Cervical Cancer C. Pérez-Plasencia, Y. C. Orbe-Orihuela, Armando Méndez-Herrera, Jessica Deas, Claudia Gómez-Cerón, H. Jiménez-Wences, J. Ortiz-Ortiz, G. Fernández-Tilapa, Aldo F. Clemente-Soto, J. R. Parra-Unda, J. S. Velarde-Félix, M. Rodríguez-Dorantes, O. Peralta-Zaragoza 2025-06-01 Biomedicines 0 33
visibility_off Evolving Resistance: The Interplay of p53, Chemoresistance, and Metastasis in Cancer's Journey Zenith Kwong 2025-06-17 MedScien 0 0
visibility_off Abstract P1-01-06: Whole-genome landscapes of 1,364 breast cancers with clinical outcomes Ryul Kim, J. Yu, Joonoh Lim, Brian Baek-Lok Oh, S. Nam, S. Kim, Jeong-Eon Lee, Byung-Joo Chae, Ji-Yeon Kim, Ga Eun Park, Bong Joo Kang, Pil Sun Baek, Soo Yeon Bae, C.I. Yoon, Young Joo Lee, D. Kim, K. Shin, Ji Eun Lee, Jun Kang, Ahwon Lee, E. Connolly-Strong, Sangmoon Lee, Bo-Rahm Lee, Yuna Lee, Kijong Yi, Youngoh Kwon, In Hwan Chun, Jung-Woon Park, Jihye Kim, Chahyun Choi, Jong-Yeon Shin, Hyunjun Lee, Minji Kim, H. Park, Ilecheon Jeong, Boram Yi, W. Lee, Jeongmin Lee, Woo Chan Park, Sung Hun Kim, Yoon-La Choi, Jeongmin Lee, Young Seok Ju, Y. Park 2025-06-13 Clinical Cancer Research 0 39
visibility_off ONECUT2 reprograms neuroendocrine fate and is an actionable therapeutic target in small cell lung cancer Mirian Gutiérrez, Irene Zamora, Raquel Iriarte, M. Pajares, Qian Yang, Chen Qian, N. Otegui, J. Fernández-Irigoyen, Enrique Santamaria, N. Alcala, A. Sexton-Oates, L. Fernandez-Cuesta, Miguel Barajas, Alfonso Calvo, Luis M. Montuenga, Beatrice S. Knudsen, Sungyong You, Michael R. Freeman, Ignacio J. Encío, Mirja Rotinen 2025-06-11 Molecular Medicine 0 37
visibility_off Exploring the m5C epitranscriptome of mRNAs in breast cancer cells through genome engineering and long-read sequencing approaches Konstantina Athanasopoulou, P. Adamopoulos, P. Tsiakanikas, Andreas Scorilas 2025-06-25 Functional & Integrative Genomics 0 16
visibility_off A survey of human cancer-germline genes : linking X chromosome localization, DNA methylation and sex-biased expression in early embryos A. Loriot, Julie Devis, Laurent Gatto, C. De Smet 2025-05-23 bioRxiv 0 21
visibility_off Genetic Mutations in Prostate Cancer: Insights and Implications Chinenye Mary Okorochi, Frederick Olusegun Akinbo, Gerald Ikechi Eze, Kehinde Elizabeth Olukoya, Enoch Chibuike Okorochi, Austin Ifeanyi Obiozor, Uzochukwu Chimdindu Ibe, Simon Enenche Iyalla, Macpherson Ifeanyi Ukachukwu 2025-05-30 World Journal of Advanced Research and Reviews 0 0
visibility_off p53 status determines the epigenetic response to demethylating agents Azacitidine and Decitabine Emma Langdale Hands, A. Wallmann, Gabrielle Oxley, Sophie Storrar, Rochelle D’Souza, Mathew Van de Pette 2025-05-19 bioRxiv 0 5
visibility_off Deciphering the tumor immune microenvironment: single-cell and spatial transcriptomic insights into cervical cancer fibroblasts Zhiheng Lin, Youwei Zhou, Zhenran Liu, Wenyang Nie, Hengjie Cao, Shengnan Li, Xuanling Li, Lijun Zhu, Guangyao Lin, Yanyu Ding, Yi Jiang, Zuxi Gu, Lianwei Xu, Zhijie Zhao, Hua-Bao Cai 2025-07-05 Journal of Experimental & Clinical Cancer Research : CR 0 9
visibility_off tugMedi: simulator of cancer-cell evolution for personalized medicine based on the genomic data of patients Iurii S. Nagornov, E. Furukawa, M. Nagai, S. Yagishita, Tatsuhiro Shibata, M. Kato 2025-07-03 bioRxiv 0 18
visibility_off Mechanism of age-related accumulation of mitochondrial DNA mutations in human blood Rahul Gupta, Timothy J. Durham, Grant Chau, M. Uddin, Wenhan Lu, K. Karczewski, D. Howrigan, P. Natarajan, Wei Zhou, Benjamin M. Neale, V. Mootha 2025-05-28 bioRxiv 0 101
visibility_off Pediatric Cancer Genetics and Genomics. Elaine R. Mardis 2025-05-28 Annual review of genomics and human genetics 0 5
visibility_off Genomic diversity in functionally relevant genes modifies neurodevelopmental versus neoplastic risks in individuals with germline PTEN variants Adriel Y Kim, L. Yehia, Ch. Eng 2025-05-20 NPJ Genomic Medicine 2 19
visibility_off Targeting TP53TG1: a promising prognostic biomarker and therapeutic target for personalized cancer therapy Haodong He 2025-07-07 Discover Oncology 0 1
visibility_off Abstract P3-05-23: Single nucleus chromatin accessibility and transcriptome analyses reveal aberrant inter-cellular communication in inflammatory breast cancer H. Nakshatri, P. Bhat-Nakshatri, Cihat Erdogan, Hongyu Gao, Yunlong Liu 2025-06-13 Clinical Cancer Research 0 67
visibility_off Biological roles of enhancer RNA m6A modification and its implications in cancer Yangyang Han, Jingqi Sun, Minghui Yao, L. Miao, Mengjia Li 2025-05-30 Cell Communication and Signaling : CCS 0 1
visibility_off HPV-driven cancers: a looming threat and the potential of CRISPR/Cas9 for targeted therapy Atefeh Zamani Kermanshahi, Fatemeh Ebrahimi, Ahmad Taherpoor, Narges Eslami, H. B. Baghi 2025-05-22 Virology Journal 0 25
visibility_off Mechanistic Foundations of KRAS-Driven Tumor Ecosystems: Integrating Crosstalk among Immune, Metabolic, Microbial, and Stromal Microenvironment. Jiayao Ma, Shenao Fu, Jun Tan, Ying Han, Yihong Chen, Xiangying Deng, Hong Shen, Shan Zeng, Yinghui Peng, Changjing Cai 2025-06-09 Advanced science 0 20
visibility_off Selective targeting of genome amplifications and repeat elements by CRISPR-Cas9 nickases to promote cancer cell death Matthew B Hanlon, Jason M Shohet, S. Wolfe 2025-06-02 Nature Communications 0 54
visibility_off LSH-mediated resolution of R-loops mitigates transcription-replication conflicts to preserve genomic stability in prostate cancer cells Kai Ni, Yu Zhang, Kun Zheng, Jianwen Huang, Nuorong Xiong, Rong Liang, Yingxiao Chen, Honglin Jin, Youlong Hai, Wang Li, Jiayi Ma, Ranxing Yang, Guanggai Xia, Yueqing Bai, Lujie Song, Xiaoyong Hu, Zijian Tang, Qiang Fu 2025-06-07 bioRxiv 0 10
visibility_off Genetic modifiers of somatic expansion and clinical phenotypes in Huntington's disease highlight shared and tissue-specific effects. Jong-Min Lee, Zachariah L. McLean, Kevin Correia, Jun Wan Shin, Sujin Lee, Jae-Hyun Jang, Yukyeong Lee, Kyung-Hee Kim, Doo Eun Choi, Jeffrey D. Long, D. Lucente, Ihn Sik Seong, Ricardo Mouro Pinto, James V. Giordano, J. Mysore, Jacqueline Siciliano, Emanuela Elezi, Jayla Ruliera, T. Gillis, V. Wheeler, M.E Macdonald, J. Gusella, Anna Gatseva, Marc Ciosi, Vilija Lomeikaite, Hossameldin Loay, Darren G. Monckton, Christopher Wills, Tom Massey, Lesley Jones, P. Holmans, Seung Kwak, Cristina Sampaio, Michael Orth, G. B. Landwehrmeyer, J. Paulsen, E. R. Dorsey, Richard H. Myers 2025-06-09 Nature genetics 0 126
visibility_off Tumor-associated macrophages contribute to cisplatin resistance via regulating Pol η-mediated translesion DNA synthesis in ovarian cancer Bilash Chatterjee, Mrinmoy Sarkar, Debanjana Ghosh, Sangita Mishra, Subhankar Bose, Md Maqsood Ahamad Khan, Senthil Kumar Ganesan, Nabanita Chatterjee, A. K. Srivastava 2025-05-29 Cellular and Molecular Life Sciences: CMLS 0 10
visibility_off Epigenetic regulators in cancer therapy and progression Hany E. Marei 2025-06-28 NPJ Precision Oncology 0 2
visibility_off Epigenetic Dysregulation in Cancer: Implications for Gene Expression and DNA Repair-Associated Pathways Nina Rembiałkowska, Katarzyna Rekiel, Piotr Urbanowicz, Mateusz Mamala, Karolina Marczuk, Maria Wojtaszek, Marta Żywica, Eivina Radzevičiūtė-Valčiukė, V. Novickij, J. Kulbacka 2025-07-01 International Journal of Molecular Sciences 0 35
visibility_off The Primary Role of Noncoding RNA in the Pathogenesis of Cancer Amil Shah 2025-06-30 Genes 0 1
visibility_off The Genetic and Evolutionary Landscape of Pentanucleotide Tandem Repeats in Human Genomes Isaac R. L. Xu, D. Pellerin, L. V. D. Vondel, Matt C. Danzi, S. Züchner 2025-05-27 bioRxiv 0 8
visibility_off Repurposing of FDA‐Approved Drugs Against Leukemia by Targeting hDus2 Anshuman Chandra, Monika Mukhija, Kanika Devi, Susmita Chaudhuri, P. Yadav, Vijay Kumar Goel 2025-06-01 ChemistrySelect 0 25
visibility_off Methylation dynamics in the decades preceding acute myeloid leukaemia Adriana V.A. Fonseca, Christopher Boniface, Caroline J. Watson, Samuel Hackett, C. Gabbutt, Akemi D. Ramos-Yamasaki, Amanda B. Tan, Jose Montoya, R. Strogantsev, Lars L. P. Hanssen, Yuexuan Zhang, Sophia Apostolidou, A. Gentry-Maharaj, Sadik C Esener, Paul T Spellman, Trevor Graham, U. Menon, Hisham Mohammed, J. Blundell 2025-06-27 bioRxiv 0 60
visibility_off Lineage memory shapes viral resistance barriers in human skin Laura C. Van Eyndhoven, Grant Kinsler, Jingchao Zhang, Aoife O’Farrell, Rim Abderrahim, Apurv Srivastav, Catherine G. Triandafillou, Todd M. Greco, Kenneth S. Zaret, I. Cristea, Megan H. Orzalli, N. Drayman, Abhyudai Singh, Arjun Raj 2025-06-27 bioRxiv 0 59
visibility_off Dissecting the epigenetic regulation of the fetal hemoglobin genes to unravel a novel therapeutic approach for β-hemoglobinopathies S. Amistadi, L. Fontana, Chiara Magnoni, T. Felix, Matteo Kane Charvin, P. Martinucci, Candice Gautier, Lilian Greau, Bettina Bessières, P. Antoniou, O. Romano, Eric Allemand, C. Mussolino, A. Miccio 2025-07-08 Nucleic Acids Research 0 29
visibility_off Intratumoral Heterogeneity of Vimentin Modulates Nuclear Mechanotransduction, DNA Damage Response and Cancer Cell Survival Infante Elvira, Terriac Emmanuel, Gelin Matthieu, Siegfried Hugo, Pereira David, Roca Vanessa, Varet Hugo, Khalilian Sara, Rietveld Reinier, Asnacios Atef, van Bodegraven Emma J, Etienne-Manneville Sandrine 2025-06-28 bioRxiv 0 0
visibility_off PHGDH drives 5-FU chemoresistance in colorectal cancer through the Hedgehog signaling Caterina Mancini, Giulia Lori, Gianluca Mattei, Marta Iozzo, Dayana Desideri, Fabio Cianchi, Laura Fortuna, Federico Passagnoli, D. Massi, Filippo Ugolini, Luca Messerini, Salvatore Piscuoglio, Antonio Pezone, Francesca Magherini, A. Biagioni, T. Lottini, Demetra Zambardino, G. Truglio, Elena Petricci, Alberto Magi, A. Arcangeli, Luisa Maresca, Barbara Stecca, E. Pranzini, M.L. Taddei 2025-07-10 Journal of Experimental & Clinical Cancer Research : CR 0 20
visibility_off Abstract P1-07-14: MutL loss in ER+ breast cancer promotes pro-tumorigenic macrophage polarization that aids migration capacity M. Raghunathan, A. Mazumder, Sabrina Carrell, D. Lozano, Nindo B Punturi, S. Haricharan 2025-06-13 Clinical Cancer Research 0 17
visibility_off Methylation-associated mutagenesis underlies variation in the mutation spectrum across eukaryotes Fabián Ramos-Almodóvar, Ziyue Gao, Benjamin F. Voight, I. Mathieson 2025-05-30 bioRxiv 0 38
visibility_off TEITbase: a database for transposable element (TE)-initiated transcripts in human cancers Yun Zhang, Jianqi She, Xueyan Hu, Yueqi Jin, Changyu Tao, Minghao Du, Ence Yang 2025-06-25 bioRxiv 0 7
visibility_off Genetic Analysis of Osteosarcoma Cells in a 9-year-old Boy: Genes Involved in Cell Cycle Control Dragan Jovanovic, Alwajih Tariq, Sara Dlugos 2025-06-20 Acta Medica Academica 0 0
visibility_off Cancer‐Associated Fibroblasts: Heterogeneity, Cancer Pathogenesis, and Therapeutic Targets Yutao Li, Qingyun Liu, Xilin Jing, Yuqi Wang, Xiaohua Jia, Xing Yang, Kezhong Chen 2025-07-01 MedComm 0 0
visibility_off KLF5 controls subtype-independent highly interactive enhancers in pancreatic cancer to regulate cell survival Thomas L. Ekstrom, Zhangshuai Dai, Julia Thiel, Meghana Manjunath, Nadine Schacherer, Bishakha Joyeeta Saha, Yara Souto, A. Abdelrahman, Frank Essmann, Sven Beyes, M. Truty, Meng Dong, Steven A. Johnsen 2025-07-08 bioRxiv 0 42
visibility_off A clinical solution for tracking clonal evolution of acute myeloid leukemia after allogeneic transplantation using bulk next generation sequencing. Elizabeth F. Krakow, Nathan Lee, Isaac Jenkins, O. Sala-Torra, Lan W. Beppu, J. Radich, Bryce Fukuda, Brenda M Sandmaier, C. Yeung, Ivana Bozic 2025-05-16 Bone marrow transplantation 0 93
visibility_off Strategies for CRISPR-based knock-ins in primary human B cells and lymphoma cell lines Sophie Lund, Chun Gong, Xin Yu, Louis M. Staudt, Daniel J Hodson, Sebastian Scheich 2025-05-16 Frontiers in Immunology 0 13
visibility_off Multigenerational cell tracking of DNA replication and heritable DNA damage Andreas Panagopoulos, Merula Stout, Sinan Kılıç, Peter Leary, Julia Vornberger, Virginia Pasti, A. Galarreta, Aleksandra Lezaja, Kyra Kirschenbühler, Ralph Imhof, H. Rehrauer, Urs Ziegler, Matthias Altmeyer 2025-05-21 Nature 1 42
visibility_off [Rethinking cancer]. W. R. Luo 2025-05-28 Zhonghua zhong liu za zhi [Chinese journal of oncology] 0 0
visibility_off Innovation and Implication of CRISPR-Mediated T-cell Engineering in Cancer Immunotherapy: A New Insight Syeda Areej Imran, H. Sultan, Muhammad Zubair, S. Ghazanfar, Anas Islam, Syed Mustafizur Rahaman, Sumel Ashique 2025-06-03 Current Cancer Therapy Reviews 0 20
visibility_off Systematic identification and targeting of master regulator checkpoints (MRC) governing tumor microenvironment-mediated immune evasion Pasquale Laise, G. Bosker, Mariana Babor, Xiaoyun Sun, Stuart Andrews, Lorenzo Tomassoni, Andrea Califano, Mariano J. Alvarez 2025-06-01 Journal for Immunotherapy of Cancer 0 7
visibility_off Tumor microenvironment heterogeneity and progression mechanisms in intrahepatic cholangiocarcinoma: A study based on single-cell and spatial transcriptomic sequencing. Fengwei Li, Yao Li, Lishan Wang, Lei Xu, Hui Xue, Wenxin Wei, Yong Xia, Lei Wang, Feng Shen, Kui Wang 2025-06-09 Hepatology 0 9
visibility_off Drugging the 'undruggable' KRAS: breakthroughs, challenges, and opportunities in pancreatic cancer. Nawaz Khan, Umar Raza, Syed Aqib Ali Zaidi, Muhadaisi Nuer, Kayisaier Abudurousuli, Yipaerguli Paerhati, Alifeiye Aikebaier, Wenting Zhou 2025-07-07 Cancer biology & medicine 0 6
visibility_off Gene DSCC1 is a Potential Biomarker in Pan-cancer Jialing Jiang, Xiaolong Yan, Dan Huang, Jieyu Chen, Xiaodan Hao 2025-05-29 Journal of Contemporary Medical Practice 0 0
visibility_off The cancer-associated SF3B1K700E spliceosome mutation confers enhanced sensitivity to BV-6-induced cytotoxicity Lydia E Roets, J. Blayney, Hayley McMillan, Patrick J Preston, Alexander Mutch, Ken I Mills, K. Savage, K. Lappin 2025-07-01 Cell Death & Disease 0 23
visibility_off MAPK and mTORC1 signaling converge on Cyclin D to enable cell-cycle re-entry in melanoma persister cells Varuna Nangia, Humza M. Ashraf, Nasreen Marikar, Victor J. Passanisi, C. R. Ill, Sabrina L. Spencer 2025-05-16 bioRxiv 0 10
visibility_off Current advances in the role of classical non‐homologous end joining in hematologic malignancies Pengcheng Liu, Zi-zhen Xu 2025-05-29 Clinical and Translational Discovery 0 1
visibility_off Abstract P2-11-20: Discovering Co-driver Genes and Pathways of Mutant TP53 in Breast Cancer by CRISPR Screening and Multi-omics Approaches Lilian Nwachukwu, Anasuya Pal, Yining Zheng, Laura González‐Malerva, Duatin Grief, Lydia Sakala, Jin G Park, Joshua LaBaer 2025-06-13 Clinical Cancer Research 0 6
visibility_off P-804 Improving CRISPR/Cas9 gene correction in early mouse embryos using RNase-resistant crRNA XT S. Jooris, A. Rybouchkin, F. Jalali, J. Parrington, F. Vanden Meerschaut, T. Hochepied, K. Claes, D. Stoop, B. Heindryckx, B. Menten 2025-06-01 Human Reproduction 0 12
visibility_off Targeting Abnormal Methylation Enzymes: A New Approach to Cancer Therapy Ming Liau, Chrinstine L. Craig, L. Baker 2025-05-24 Journal of Cancer and Tumor International 0 2
visibility_off DNA methylation remodeling in temozolomide resistant recurrent glioblastoma: comparing epigenetic dynamics in vitro and in vivo Michela Buonaiuto, Mariella Cuomo, Davide Costabile, Federica Trio, Sara Ferraro, O. Affinito, Alberto De Bellis, Maria Laura Del Basso De Caro, Roberta Visconti, Lorenzo Chiariotti, Giuseppe Catapano, R. Della Monica 2025-07-10 Journal of Translational Medicine 0 15
visibility_off Germline-somatic liaison dictates cancer subtype via de novo steroid biosynthesis. P. Gasperini, A. Alaimo, Blerta Stringa, Yoon-Mi Chung, Yari Ciani, F. Lorenzin, Giulia Fracassi, Y. Zekri, F. Orlando, Orsetta Quaini, Sebastian Gregoricchio, G. Petris, Antonio Casini, Christopher E Barbieri, W. Zwart, A. Cereseto, Nima Sharifi, Andrea Lunardi, F. Demichelis 2025-06-13 Cancer discovery 0 47
visibility_off METTL5 Blockade Enhances Anti-Tumor Immune Response via Inducing Neoantigen Generation Yangyi Zhang, Xiaoyan Shi, Yuci Wang, Ruiqi Wang, Yanlan Cao, Hao Chen 2025-06-07 bioRxiv 0 4
visibility_off Cancer-Associated PIK3R1 Genetic Aberrations and Precision Medicine Huan Xie, Yirong Li, Xinran Li 2025-06-12 International Journal of Medical Sciences 0 3
visibility_off Pathway Sculptor for Compact and Versatile Combinatorial Genetic Perturbation Bo Gu, James M. Linton, Brice Graham Hendrickson, Hengyu Li, Ron Hadas, Gal Manella, Jan Gregrowicz, M. Elowitz 2025-06-16 bioRxiv 0 63
visibility_off ANP32E drives vulnerability to ATR inhibitors by inducing R-loops-dependent transcription replication conflicts in triple negative breast cancer Sara Lago, V. Poli, Lisa Fol, Mattia Botteon, Federica Busi, Alice Turdo, Miriam Gaggianesi, Yari Ciani, Giacomo D’Amato, Luca Fagnocchi, A. Fasciani, F. Demichelis, Matilde Todaro, A. Zippo 2025-05-17 Nature Communications 0 21
visibility_off Progress in CRISPR Technology for Antiviral Treatments: Genome Editing as a Potential Cure for Chronic Viral Infections Fatemeh Nouri, Farnaz Alibabaei, Behina Forouzanmehr, Hamed Tahmasebi, Valentyn Oksenych, Majid Eslami 2025-05-20 Microbiology Research 0 19
visibility_off ZMYND8 promotes the Warburg effect and tumorigenesis through c-Myc activation in pancreatic cancer. Hui Liu, Zhifeng Zhao, Changle Wu, Jinxin Chen, Zhiwei He, Kai Jiang 2025-06-27 Oncogene 0 2
visibility_off In-Silico Characterization of TP53 Splice Mutations in Somatic and Germline Tumours Apeksha Arun Bhandarkar, Noah Ethan Kelly-Foleni, Debina Sarkar, Aaron Jeffs, Tania Slatter, Anthony Braithwaite, Sunali Y Mehta 2025-06-01 bioRxiv 0 18
visibility_off Abstract P1-02-25: New Murine Mammary Tumor Cell Lines for Syngeneic Studies Including Immunotherapy Thomas J Kalantzakos, Anusha Soni, Cameron Durfee, Chris Mullally, Benjamin Troness, R. Harris, Harshita B. Gupta 2025-06-13 Clinical Cancer Research 0 73
visibility_off YTHDC1 orchestrates oncogenic splicing via the CLK1-SRSF1 splicing machinery to regulate castration-resistant prostate cancer progression. Parth Gupta, Devesh Srivastava, Vinayak Nayak, B. V. Rao, K. Suseela, Rakesh Sharma, S. Rajappa, T. S. Rao, Parul Mishra, Ashish Misra 2025-05-22 Molecular and cellular biochemistry 0 18
visibility_off Dual ENPP1/ATM depletion blunts DNA damage repair boosting radioimmune efficacy to abrogate triple-negative breast cancer Borja Ruiz-Fernández de Córdoba, K. Valencia, C. Welch, Haritz Moreno, S. Martínez-Canarias, C. Zandueta, Eduardo Gómez, Alfonso Calvo, N. Otegui, M. Echepare, Ignacio Garzón, D. Ajona, David Lara-Astiaso, Elisabet Guruceaga, Laura Guembe, Ruben Pio, I. Melero, Silve Vicent, Fernando Pastor, R. Martinez-Monge, F. Lecanda 2025-06-13 Signal Transduction and Targeted Therapy 0 42
visibility_off Exploring CRISPR Cloning and Beyond Through a Biochemical Lens in Genetic Biotechnology Mariam Mariam, Khizra Ikhlaq, Zulaikha Abid, Fatima Sahar Uraf Maryam, Syed Qasim Mehmood, Ahtasham Ahmad, Sohrab Anwar Abbasi, Imran Ali Sani, Muhammad Adeel 2025-07-02 Scholars Academic Journal of Biosciences 0 1
visibility_off Offspring effect of maternal preconception exposure to metabolic disruptors Carlos Díaz-Castillo, Stephanie R. Aguiar, Raquel Chamorro-Garcia 2025-05-27 bioRxiv 0 10
visibility_off Discovery and Characterization of Small Molecule Inhibitors Targeting Exonuclease 1 for Homologous Recombination-Deficient Cancer Therapy Yixing Wang, Jessica D Hess, Chen Wang, Lingzi Ma, Megan Luo, J. Jossart, John J. Perry, David Kwon, Zhe Wang, Xinyu Pei, Changxian Shen, Yingying Wang, Mian Zhou, Holly Yin, David Horne, A. Nussenzweig, Li Zheng, Binghui Shen 2025-05-16 ACS Chemical Biology 0 30
visibility_off Integrative analysis of mRNA stability regulation uncovers a metastasis-suppressive program in breast cancer Heather Karner, Tabea Mittmann, Vicky W. Chen, Ashir A. Borah, Andreas Langen, Hassan Yousefi, L. Fish, Balyn W. Zaro, A. Navickas, Hani Goodarzi 2025-06-07 bioRxiv 0 20
visibility_off Divergent FOXA1 mutations drive prostate tumorigenesis and therapy-resistant cellular plasticity. Sanjana Eyunni, R. Mannan, Yuping Zhang, E. Young, Qiuyang Zhang, Jie Luo, Matthew Pang, Somnath Mahapatra, J. Tien, James M. George, Mustapha Jaber, Hamzah Hakkani, Sandra E Carson, Abigail J Todd, Noshad Hosseini, M. Gondal, Ryan J. Rebernick, Xuhong Cao, Fengyun Su, Rui Wang, Rohit Mehra, Jing Li, Marcin P. Cieslik, A. Chinnaiyan, A. Parolia 2025-06-26 Science 0 169
visibility_off RNA Through Time: From the Origin of Life to Therapeutic Frontiers in Transcriptomics and Epitranscriptional Medicine Cecilia Martínez-Campos, Humberto Lanz-Mendoza, Jorge Cime-Castillo, O. Peralta-Zaragoza, Vicente Madrid-Marina 2025-05-22 International Journal of Molecular Sciences 0 24
visibility_off XPO1R749Q Mutations Co-occur with POLE Mutations in Cancer and can be Targeted to Overcome Chemoresistance. T. Totiger, Wannasiri Chiraphapphaiboon, Y. Baca, S. Chaudhry, R. Notti, S. Montoya, M. Chojnacka, Gabriel Gaidosh, Jumana Afaghani, Maurizio Affer, Chris Armstrong, Paul M Kavanaugh, Efe Karaca, Jenna Zabroski, Michael Lewis, Alyssa Maye, Jacob Jahn, R. Soni, Daniel Bilbao, Phil Walker, Andrew Elliott, E. Lou, Wafik S. El-Deiry, Josean Rodriguez, Hai Dang Nguyen, Justin Taylor 2025-06-18 Cancer research 0 13
visibility_off Competing Subclones and Fitness Diversity Shape Tumor Evolution Across Cancer Types Haiming Chen, Jingmin Shu, Rekha Mudappathi, Elaine Li, Panwen Wang, Leif Bergsagel, Ping Yang, Zhifu Sun, Logan Zhao, Changxin Shi, Jeffrey P. Townsend, Carlo Maley, Li Liu 2025-06-03 bioRxiv 0 5
visibility_off Epigenetic modifications in follicular cell-derived thyroid cancer: new dimensions in pathogenesis and treatment Yanmei Han, Bian Wu, Jie Tan, Ruolin Wu, Jingjing Wang, Xiaojing Ren, Yajing Zhang, Zairong Gao, Xiaotian Xia 2025-05-20 Frontiers in Oncology 0 7
visibility_off Are Mitochondria the True Origin of Cancer? A Hypothesis-Driven Perspective Sergio Da Silva 2025-07-01 Onco 0 5
visibility_off Pituitary tumor transforming gene 1 and endocrine cancers: an up-to-date review through history, current insights and future perspectives. E. Vergani, Emanuela Teveroni, Francesca Mancini, F. Di Nicuolo, S. Raia, S. Chiloiro, F. Pierconti, Antonio Bianchi, A. M. Isidori, Alfredo Pontecorvi, Domenico Milardi 2025-06-01 Endocrine-related cancer 0 25
visibility_off Abstract P2-04-10: ARL3 Promotes Hormone Receptor Positive Breast Cancer Progression and Tamoxifen Resistance through ERα Stablization Han Li, Yang Liu, Zehao Cai, Dan-hua Shu, Yang Peng, Kang Li, Shengchun Liu 2025-06-13 Clinical Cancer Research 0 7
visibility_off Loss of DHX36/G4R1, a G4 resolvase, drives genome instability and regulates innate immune gene expression in cancer cells Anna R Bartosik, Pei-Chi Hou, Shangming Tang, James P. Vaughn, P. J. Smaldino, A. Ratan, Marty W. Mayo, Yuh-Hwa Wang 2025-06-20 Nucleic Acids Research 0 39
visibility_off In-depth analysis of the mode of action of resveratrol: genome-wide characterization of G-quadruplex binding properties Ana Soriano-Lerma, Victoria Sánchez-Martín, Javier Murciano-Calles, Matilde Ortiz-González, Maria J. Tello-Lopez, Virginia Pérez-Carrasco, Ángel Linde-Rodríguez, Inmaculada Ramírez-Macías, Irene Gómez-Pìnto, Inmaculada López-Aliaga, M. Soriano, Jose A. Garcia Salcedo 2025-06-20 Cellular & Molecular Biology Letters 0 12
visibility_off ILF2 blockade suppresses helicase-mediated R-loop resolution to induce lethality in homologous recombination-deficient cancers Yi Chieh Lim, Soak-Kuan Lai, Ru Han Yang, Yong Kang Chua, Rémi Patouret, Vaishnervi Manoj, Colin Chun Xuan Soh, Benjamin Lebeau, Ning Cham, Wei Meng, Sze Keong Tey, Szu Ling Yeap, Songjing Zhang, Jessie Yong Xing Woon, Zahin Ali, Marek Mutwil, Pritpal Singh, M. Fullwood, Linda LD Zhong, Xue Ming Dong, Chiba Shunsuke, Cheng-Gee Koh, Li Hoi Yeung 2025-06-27 bioRxiv 0 14
visibility_off Distinct genomic landscape of Lynch syndrome–associated urothelial cancer. Jussi Nikkola, Lauri Ryyppö, Juuso Vuorinen, Lauri Moilanen, Maarit Ahtiainen, K. Pylvänäinen, Hanna Selin, Tuomo Virtanen, M. Nykter, T. Veitonmäki, J. Mecklin, T. Seppälä, M. Annala 2025-06-01 Journal of Clinical Oncology 0 90
visibility_off Human TLS DNA polymerase: saviors or threats under replication stress? Y. S. Rajpurohit, Mitu Lal, D. K. Sharma, Ishu Soni 2025-05-23 Molecular and cellular biochemistry 0 15
visibility_off Generation of the ICGi019-B-1 and ICGi019-B-2 lines via correction of the p.Met659Ile (c.1977G>A) variant in MYH7 of patient-specific induced pluripotent stem cells using CRISPR/Cas9 A. E. Shulgina, S. Pavlova, J. Minina, S. Zakian, E. V. Dementyeva 2025-06-01 Vavilov Journal of Genetics and Breeding 0 22
visibility_off Spatio-temporal patterns of active epigenetic turnover Fabrizio Olmeda, Misha Gupta, Onurcan Bektaş, Steffen Rulands 2025-05-19 ArXiv 0 3
visibility_off Beyond the Limit: MYC Mediates Tumor Immune Escape Zhongyang Hong, Sitong Ming, Xin Luan, Zhe Sun, Weidong Zhang 2025-06-29 Pharmaceuticals 0 4
visibility_off Abstract P1-09-18: Activation of HERV-R is a biomarker of poor prognosis among rural Nigerian women with triple-negative breast cancer Faruk Mohammed, Mohammed Daniyan, Ines Hosni, H. S. Musa, S. K. Owolabi, A. Umar, Y. Iliyasu, Rebecca Garnham, Jane Carr-Wilkinson, Sani Ibrahim, Kevin Petrie 2025-06-13 Clinical Cancer Research 0 11
visibility_off AURKA inhibition amplifies DNA replication stress to foster WEE1 kinase dependency and synergistic antitumor effects with WEE1 inhibition in cancers Jong Woo Lee, Jackie Shi, Julian Barrantes, Pratima Chaurasia, Sundong Kim, S. Cruz-Gomez, Cindy Yang, Jianlei Gu, Hongyu Zhao, Dejian Zhao, Benjamin Schiff, Ansley Roche, Elizabeth B. Perry, Jeffrey P. Townsend, Gary M. Kupfer, Katerina Politi, E. Golemis, Barbara Burtness 2025-05-29 bioRxiv 0 9
visibility_off Genes of the “regulation of lymphocyte activation” pathway may influence immune cells infiltration in growth hormone secreting pituitary tumors S. Chiloiro, Flavia Costanza, G. L. Scaglione, Filippo Russo, Carmela Nardelli, A. Giampietro, P. Mattogno, L. Lauretti, Guido Rindi, L. De Marinis, Marco Gessi, Antonio Bianchi, Francesco Doglietto, E. Capoluongo, Alfredo Pontecorvi 2025-05-26 Pituitary 0 28
visibility_off Engineering novel CRISPRi repressors for highly efficient mammalian gene regulation Andrew J Kristof, Krithika Karunakaran, Christopher Allen, Paula Mizote, Sophie Briggs, Zixin Jian, Patrick Nash, J. Blazeck 2025-06-12 Genome Biology 0 0
visibility_off Alternative splicing in human cells exposed to ionizing radiation: a comprehensive review of ex vivo and in vivo studies. Jerónimo Leberle, Marina Perona, A. Choudhury, N. Bellora, Irene L Ibañez, Luisa V. Biolatti 2025-05-22 International journal of radiation biology 0 25
visibility_off Using long-read sequencing to detect and subtype a case with Temple syndrome Sarah Dada, Vahid Akbari, Duha Hejla, Yaoqing Shen, Katherine Dixon, S. Choufani, Rosanna Weksberg, Cornelius F Boerkoel, Laura Stewart, Kamilla Schlade-Bartusiak, Emma Strong, Danya Fox, Daniel Gamu, William T. Gibson, Steven J M Jones 2025-05-29 Journal of Medical Genetics 0 39
visibility_off Multiple FGFR1 mutations modulate tumorigenic mechanisms in glioneuronal tumors Jacopo Boni, Míriam Fernández-González, HyeRim Han, Carla Roca, Cassandra J. Wong, Cristina Rioja, C. Nogué, Leticia Manen-Freixa, J. Boulais, Endika Torres-Urtizberea, Antonio Gómez, M. Hasselblatt, R. Estrada-Tejedor, A. Antolin, Islam E. Elkholi, Nada Jabado, Jean-François Côté, A. Gingras, Barbara Rivera 2025-05-28 bioRxiv 0 109
visibility_off Retrotransposition-competent L1s are increased in the genomes of individuals with amyotrophic lateral sclerosis A. Pfaff, Sulev Kõks 2025-06-03 Experimental Biology and Medicine 0 10
visibility_off Clonal memory of cell division in humans diverges between healthy haematopoiesis and acute myeloid leukaemia A. Donada, G. Hermange, T. Tocci, A. Midoun, G. Prevedello, L. Hadj Abed, D. Dupré, W. Sun, I. Milo, S. Tenreira Bento, C. Pospori, A. Innes, C. Willekens, J. Vargaftig, D. Michonneau, C. Lo Celso, N. Servant, KR Duffy, H. Isambert, PH Cournède, L. Laplane, L. Perie 2025-06-24 bioRxiv 0 25
visibility_off CTC1-STN1-TEN1 controls DNA break repair pathway choice via DNA end resection blockade. Cody M Rogers, Hardeep Kaur, Michelle L Swift, Vivek B Raina, Shuo Zhou, Ajinkya S Kawale, Shahrez Syed, Korilynn G Kelly, Angela M Jasper, Sameer Salunkhe, Youngho Kwon, Jeffrey Wang, Aida Badamchi Shabestari, J. Daley, Adam Sacks, M. Gaczynska, P. Osmulski, Yashpal Rawal, N. Tomimatsu, S. Gayther, K. Lawrenson, S. Burma, Elizabeth V. Wasmuth, Shaun K. Olsen, Weixing Zhao, R. Hromas, David S. Libich, Alexander V. Mazin, Daohong Zhou, E. Greene, Dipanjan Chowdhury, Patrick Sung 2025-05-22 Science 0 84
visibility_off Abstract P5-06-26: APOBEC3B And DNA Damage Repair As Synthetic Lethal Pairs B. Stefanovska, Benjamin Troness, Kevin Lin, Chad Myers, R. Harris 2025-06-13 Clinical Cancer Research 0 73
visibility_off Macroscopic Analyses of RNA-Seq Data to Reveal Chromatin Modifications in Aging and Disease Achal Mahajan, Francesca Ratti, Ban Wang, Hana El-Samad, James H. Kaufman, Vishrawas Gopalakrishnan 2025-05-18 bioRxiv 0 11
visibility_off Unveiling the differences in tumor immune microenvironment between KRAS -wildtype and KRAS -mutant pancreatic ductal adenocarcinoma. Heidi Ko, S. Pabla, Michelle F Green, M. Senosain, Hardik Parikh, Erik Van Roey, Shuang Gao, Yamuna Pulivendula, P. DePietro, Stuti Kaushalkumar Patel, Kyle C. Strickland, R. Previs, Erin Newburn, Kamal S Saini, Alicia Dillard, Eric A Severson, Brian Caveney, Taylor J. Jensen, Shakti H. Ramkissoon, R. Seager 2025-06-01 Journal of Clinical Oncology 0 28
visibility_off R-loops shape chromatin architecture to promote balanced lineage allocation during differentiation Chun-Hao Chao, T. Fazzio 2025-06-25 bioRxiv 0 28
visibility_off Abstract P3-04-17: 16q is a breast cancer suppressor arm Sean E Egan, Idil Eda Temel, Yeji An, Katelyn J Kozma, Amanda J. Loch, Wei Wang 2025-06-13 Clinical Cancer Research 0 8
visibility_off Genes driving three-dimensional growth of immortalized cells and cancer Mukta Basu, Jin-Fen Xiao, Saravana Kumar Kailasam Mani, Fangyuan Qu, Yongqi Lin, Jason Duex, Huihui Ye, Vanessa Neang, Dan Theodorescu 2025-06-10 Cell Death & Disease 0 5
visibility_off Dysregulation of the low-level replication stress response in transformed cell lines S. Ragu, E. Dardillac, Sylvain Caillat, J. Ravanat, Bernard S. Lopez 2025-06-06 Scientific Reports 0 69
visibility_off Joint inference of mutational signatures from indels and single-nucleotide substitutions reveals prognostic impact of DNA repair deficiencies Patricia Ferrer-Torres, Iván Galván-Femenía, Fran Supek 2025-07-03 Genome Medicine 0 1
visibility_off A Novel Framework for the Design of Minimized Epigenetic Clocks Using the Analysis of DNA Methylation Heterogeneity S. E. Romanov, Dmitry I. Karetnikov, D. A. Kalashnikova, Denis E. Polivcev, Yakov A. Osipov, D. A. Maksimov, Polina A. Antoshina, Viktor V. Shloma, E. Samoilova, Alina A. Ivanova, Rustam F. Karimov, A. N. Tkalin, Alexander A. Shevchenko, V. Kalsin, V. Baklaushev, P. P. Laktionov 2025-05-23 International Journal of Molecular Sciences 0 11
visibility_off Modified hTERT promoters-driven purine nucleoside phosphorylase-gene therapy in association with chemo- and targeted therapy in the context of ovarian cancer. Quoc Manh Nguyen, Pierre-François Dupré, Mathieu Berchel, Marylène Lévêque, Sylvie Choblet-Thery, F. d’Arbonneau, T. Montier 2025-06-27 Cancer gene therapy 0 32
visibility_off Role of PLK4 inhibition in cancer therapy. Kishore Banik, Thomas J Hayman 2025-06-13 Cancer metastasis reviews 0 0
visibility_off Damage and Misrepair Signatures: Compact Representations of Pan-cancer Mutational Processes Caitlin F. Harrigan, Kieran R. Campbell, Quaid Morris, Tyler Funnell 2025-06-01 bioRxiv 0 9
visibility_off Investigation of a germline variant of uncertain significance (MRE11:c.1138C > T) identified by exome sequencing in a cancer-affected individual and co-segregation analysis in affected and unaffected family members. Mohammadreza Saberiyan, Mohammad Reza Seyedtaghia, Elham Mojodi, A. Nejatizadeh 2025-05-31 Molecular biology reports 0 23
visibility_off Investigation of Structural Mechanisms Underlying p53 Dysfunction Caused by 148 Missense Mutations Using AlphaFold3 and Molecular Dynamics Simulations. Khondamir R Rustamov, J. I. Razzokov, A. Baev 2025-06-04 Journal of chemical information and modeling 1 10
visibility_off MicroRNA-driven organ-specific metastasis in triple-negative breast cancer: biogenesis, mechanisms, and therapeutic approaches. Deepshikha Rathore, Sweny Jain, Shanaya Patel, Nandani Dharwal, N. Shukla, Chirag Desai, Jigna Shah, Heena V. Dave 2025-06-28 Medical oncology 0 3
visibility_off A Bayesian Approach for Identifying Driver Mutations within Oncogenic Pathways through Mutual Exclusivity Xinjun Wang, Caroline E. Kostrzewa, Allison Reiner, Ronglai Shen, Colin B Begg 2025-05-31 bioRxiv 0 2
visibility_off Predicting transposable element-derived neoantigens in ATRX-mutated sarcoma. Simon Cao, Ziyang Wang, B. Nacev 2025-06-01 Journal of Clinical Oncology 0 4
visibility_off BRCA2 reversion mutation–independent resistance to PARP inhibition through impaired DNA prereplication complex function Kyrie Pappas, Matteo Ferrari, Perianne Smith, S. Nandakumar, Zahra Khan, Serina B. Young, Justin Laclair, M. V. Russo, Emmet Huang-Hobbs, Nikolaus Schultz, W. Abida, Wouter Karthaus, M. Jasin, Charles L Sawyers 2025-06-03 Proceedings of the National Academy of Sciences of the United States of America 0 100
visibility_off RNA G-quadruplexes: emerging regulators of gene expression and therapeutic targets. Zukela Ruzi, Wei Zha, Huang Yuan Yuan, Jiaorui Liu 2025-07-03 Functional & integrative genomics 0 5
visibility_off RBM5 recruiting MGC32805 in a sandwich mode and inducing ΔFAS neoantigen and triggering FAS properties switch: implication in colorectal cancer. Huizhe Wu, Xiaoyun Hu, Yilin Wang, Xianglong Zhu, Qing Zhao, Ying Zhao, Wanlin Cui, Mingrong Zhang, Haishan Zhao, Kai Li, Minjie Wei 2025-06-26 Oncogene 0 30
visibility_off CREPT is required for the metastasis of triple-negative breast cancer through a co-operational-chromatin loop-based gene regulation Jianghua Li, Lu Xu, Jiayu Wang, Xuning Wang, Yuting Lin, Alex Yutian Zou, Fangli Ren, Yinyin Wang, Jun Li, Zhijie Chang 2025-06-10 Molecular Cancer 0 3
Abstract Title Authors Publication Date Journal/Conference Citation count Highest h-index