Spatial-Heterogeneity forecasting

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Manually curated articles on Spatial-Heterogeneity forecasting

Abstract Title Authors Publication Date Journal/ Conference Citation count Highest h-index View recommendations
visibility_off Spatial epitope barcoding reveals subclonal tumor patch behaviors Xavier Rovira-Clavé, Alexandros P. Drainas, Sizun Jiang, Yunhao Bai, M. Baron, Bokai Zhu, Maxim Markovic, Garry L. Coles, M. Bassik, J. Sage, G. Nolan 2021-06-11 bioRxiv 12 102 open_in_new
Abstract Title Authors Publication Date Journal/ Conference Citation count Highest h-index View recommendations

Abstract Title Authors Publication Date Journal/Conference Citation count Highest h-index
visibility_off Modeling cellular influence delineates functionally relevant cellular neighborhoods in primary and metastatic pancreatic ductal adenocarcinoma Yeonju Cho, Jae W. Lee, Sarah M. Shin, Alexei Hernandez, Xuan Yuan, Jowaly Schneider, Jody E. Hooper, Laura D. Wood, Elizabeth M. Jaffee, Atul Deshpande, W. Ho 2025-06-17 bioRxiv 0 12
visibility_off Single-cell spatial proteomics of non-relapse small cell lung cancer identifies tumor microenvironment determinants of survival Yin Li, L. Xia, Hui Wang, Xinghao Ai, Ying Wang, Qingquan Luo, Yuchen Han, Shun Lu, Xinghua Cheng 2025-06-17 Cell Biology and Toxicology 0 13
visibility_off Genetic barcoding uncovers the clonal makeup of solid and liquid biopsies and their ability to capture intra-tumoral heterogeneity A. Serrano, Tom S. Weber, J. Berthelet, Sarah Ftouni, Farrah El-Saafin, Verena C. Wimmer, K. Rogers, Elgene Lim, Emmanuelle Charaffe-Jauffret, Christophe Ginestier, David Williams, Frédéric Hollande, B. Yeo, Sarah-Jane Dawson, S. Naik, D. Merino 2025-06-17 bioRxiv 0 39
visibility_off Spatial determinants of tumor cell dedifferentiation and plasticity in primary cutaneous melanoma Tuulia Vallius, Yingxiao Shi, Edward Novikov, Shishir M Pant, R. Pelletier, Yu-An Chen, Juliann B. Tefft, Ajit Nirmal Johnson, Z. Maliga, Guihong Wan, George F. Murphy, S. Santagata, Yevgeniy R. Semenov, David Liu, C. G. Lian, P. Sorger 2025-06-24 bioRxiv 0 31
visibility_off Tumor Cells Enriched for Interferon and Inflammatory Programs Pre-Exist in High Grade Serous Ovarian Cancer and are Proportionately Significantly Increased Post Chemotherapy B. Winterhoff, Nomeda Girnius, Muyi Liu, Jaeyoung Kang, Mihir Shetty, M. A. Martinez-Gakidis, Weiyi Xu, Mayura Thomas, Linna Lahmadi, Aylin Z. Henstridge, Pilar Baldominos, Shobhana Talukdaer, Z. Chang, Jordan Mattson, Morgan Gruner, Sally A. Mullany, Peter Argenta, Gottfried E. Konecny, Dennis J. Slamon, Ronny Drapkin, Andrew C. Nelson, Timothy K. Starr, Joan S Brugge 2025-06-25 bioRxiv 0 11
visibility_off High-definition spatial transcriptomic profiling of immune cell populations in colorectal cancer Michelli F Oliveira, J. P. Romero, Meii Chung, Stephen R. Williams, Andrew D. Gottscho, Anushka Gupta, Susan E. Pilipauskas, Seayar Mohabbat, Nandhini Raman, David Sukovich, David Patterson, Sarah E B Taylor 2025-06-05 Nature Genetics 1 8
visibility_off Clonal lineage tracing and parallel multiomics profiling reveal transcriptional diversification induced by ARID1A deficiency Kenichi Miyata, Liying Yang, Yuxiao Yang, Kohei Kumegawa, R. Maruyama 2025-05-28 bioRxiv 0 8
visibility_off Single-Cell and Spatial Profiling of Tumor Microenvironment Heterogeneity in Human Osteosarcomas Xuejing zheng, Jin Yuan, Peng Jin, Xuejun Wang, Runlei Xu, Helin Feng, Xinxin Zhang, Yongjie Xie, Wence Wu 2025-07-02 bioRxiv 0 3
visibility_off Oncogenic drivers shape the tumor microenvironment in human gliomas Bo Zhao, Chae Yun Cho, Lingqun Ye, Tula Keal, Thomas Mitchell, Inés Martín-Barrio, C. A. Faraj, Mesut Unal, Jessica Alsing, Nora M Lawson, Ellie Rahm Kim, Francisco Chavez, Kristy Mendoza Rangel, Sanjay K Singh, Joseph H. McCarthy, D.M. Ashley, W. Yung, Vinay K. Puduvalli, Guy Nir, Jeffrey S. Weinberg, Linghua Wang, Keith L. Ligon, G. Genovese, Peter Van Loo, P. Futreal, Jason T. Huse, Jesse R. Dixon, Frederick F. Lang, Kadir C. Akdemir 2025-05-21 bioRxiv 0 50
visibility_off Intra-tumoral spatial heterogeneity in breast cancer quantified using high-dimensional protein multiplexing and single cell phenotyping Alison M. Cheung, Dan Wang, M. Quintayo, Yulia Yerofeyeva, Melanie Spears, John M. S. Bartlett, Lincoln Stein, Jane Bayani, Martin J Yaffe 2025-05-21 Breast Cancer Research : BCR 0 8
visibility_off Actionable biological programs to enhance EGFR-targeted therapy response unveiled by single-cell lineage tracing in clinically relevant lung cancer models Beatrice Gini, W. Tamaki, Johnny Yu, Dora Barbosa, Wei Wu, Yashar K Pourmoghadam, Paul Allegakoen, Donghwa Kim, S. Miglani, Sarah Elmes, V. Olivas, Hani Goodarzi, T. Bivona 2025-05-23 bioRxiv 0 60
visibility_off The tumor microenvironment across four dimensions: assessing space and time in cancer biology Christina R. Larson, Ayushi Mandloi, Satwik Acharyya, Julienne L. Carstens 2025-06-23 Frontiers in Immunology 0 13
visibility_off A spatial atlas of chemoradiation therapy in pancreatic cancer identifies cellular and microenvironmental determinants of persister populations Vincent Bernard, Li-Ting Ku, Tianyu Wang, Ariana Acevedo-Diaz, K. Rajapakshe, Galia Jacobson, Daniela Tovar, Jimin Min, Guangsheng Pei, Candise Tat, Ayush Suresh, Ching-Wei Tzeng, Matthew HG Katz, M. Bhutani, Huaming Wang, Robert A. Wolff, C. Haymaker, E. Ludmir, Huocong Huang, Xiongfeng Chen, Liang Li, Albert C Koong, Linghua Wang, N. Navin, Dadi Jiang, Ziyi Li, Anirban Maitra, Eugene J. Koay 2025-06-25 bioRxiv 0 59
visibility_off Epigenetic Subtypes of High-Grade T1 Bladder Cancer Reveal Intra-Tumor Heterogeneity and Distinct Interactions with Tumor Microenvironment J. Bellmunt, Yingtian Xie, N. Juanpere, M. Munoz, Shweta Kukreja, Sonsoles Liria Veiga, Rong Li, Xintao Qiu, Yijia Jiang, Alba Font-Tello, Marie Nunez Duarte, Ilana B. Epstein, Silvia Hernández-Llodrà, Marta Lorenzo, Silvia Menendez, T. Choueiri, Myles Brown, H. Long, Paloma Cejas 2025-06-20 bioRxiv 0 26
visibility_off Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis José Reyes, Isabella S. Del Priore, Andrea C. Chaikovsky, Nikhita Pasnuri, Ahmed M. Elhossiny, Tobias Krause, Andrew Moorman, Catherine Snopkowski, Meril Takizawa, Cassandra Burdziak, Nalin Ratnayeke, Ignas Masillioni, Yu-jui Ho, R. Chaligné, P. Romesser, A. Filliol, T. Nawy, John P. Morris, Zhen Zhao, M. P. di Magliano, Direna Alonso-Curbelo, D. Pe’er, Scott W. Lowe 2025-06-12 bioRxiv 0 31
visibility_off Spatial Biology and Organoid Technologies Reveal a Potential Therapy-Resistant Cancer Stem Cell Population in Pancreatic Ductal Adenocarcinoma Pritha Adhikary, Jayati Chakrabarti, Jiang Wang, Ugonna Ezuma-Igwe, Xi Sun, Willian C. Bastian, Nicolas Braissand, Megan P. Corbett, Eugene F. Douglass, Sangmin Kim, Rohan Kanakamedala, Abigail G. Branch, Saptarshi Mallick, Meenu Priya Resmi, Payton Stevens, Marco Padilla-Rodriguez, Maga Sanchez, Gregory Lawrence Beatty, James Griffin, Petros G. Nikolinankos, Kellen Chen, Taylor Riall, Syed A. Ahmad, Rachna Shroff, Frédéric Hollande, Davendra P. S. Sohal, Yana Zavros 2025-05-24 bioRxiv 0 6
visibility_off Tracing colorectal malignancy transformation from cell to tissue scale Helena L. Crowell, Irene Ruano, Zedong Hu, Yourae Hong, G. Caratù, Hubert Piessevaux, Ashley Heck, Rachel Liu, Max Walter, Megan Vandenberg, Kimberly Young, Dan McGuire, Evelyn Metzger, Margaret L Hoang, Joseph M. Beechem, Sabine Tejpar, A. Pascual-Reguant, Holger Heyn 2025-06-27 bioRxiv 0 13
visibility_off Comparison of QuPath and HALO platforms for analysis of the tumor microenvironment in prostate cancer Wei Zhang, Qin Zhou, Jonathan V. Nguyen, Erika Egal, Qian Yang, Michael R. Freeman, S. Hu-Lieskovan, Gita Suneja, Anna Coghill, Beatrice S Knudsen 2025-05-21 bioRxiv 0 44
visibility_off Phylogenetic inference reveals clonal heterogeneity in circulating tumor cell clusters David Gremmelspacher, Johannes Gawron, B. Szczerba, Katharina Jahn, Francesc Castro-Giner, Jack Kuipers, Jochen Singer, Francesco Marass, Ana Gvozdenovic, Selina Budinjas, Heike Pueschel, Cyril Rentsch, Alfred Zippelius, V. Heinzelmann-Schwarz, Christian Kurzeder, W. Weber, Christoph Rochlitz, Marcus Vetter, N. Beerenwinkel, Nicola Aceto 2025-06-02 Nature Genetics 0 63
visibility_off Spatially resolved C1QC+ macrophage-CD4+ T cell niche in colorectal cancer microenvironment: implications for immunotherapy response Hangyu Zhang, Libing Hong, Zhen Dong, Shan Xin, Bo Lin, Jinlin Cheng, Weihong Tian, Bin Li, Jing Wang, Xiaoyan Liu, Chuan Liu, Yuzhi Jin, Yanzhi Feng, Ge Su, Xuqi Sun, Qiqi Liu, Xiaomeng Dai, Yang Gao, Zhou Tong, Lulu Liu, Xudong Zhu, Yi Zheng, Peng Zhao, Tiannan Guo, Weijia Fang, Xuanwen Bao 2025-07-01 Cell Discovery 0 20
visibility_off Panoramic spatial enhanced resolution proteomics (PSERP) reveals tumor architecture and heterogeneity in gliomas Ziyan Xu, Yunzhi Wang, Tao Xie, Rongkui Luo, Heng-Li Ni, Hang Xiang, Shaoshuai Tang, S. Tan, Rundong Fang, Peng Ran, Qiao Zhang, Xiaomeng Xu, Shan Tian, Fuchu He, Wenjun Yang, Chen Ding 2025-05-26 Journal of Hematology & Oncology 0 17
visibility_off Single-cell transcriptional dissection illuminates an evolution of immunosuppressive microenvironment during pancreatic ductal adenocarcinoma metastasis Xiaowei Liu, Jinen Song, Meiling Yuan, Fengli Zuo, Huihui Li, Leyi Tang, Xinmin Wang, Xueyan Wang, Qian Xiao, Li Li, Xinyu Liu, Zhankun Yang, Jian-Lin Wu, Jing Jing, Xuelei Ma, Hubing Shi 2025-06-09 Signal Transduction and Targeted Therapy 0 9
visibility_off MOSAIC: Intra-tumoral heterogeneity characterization through large-scale spatial and cell-resolved multi-omics profiling Caroline Hoffmann 2025-05-20 bioRxiv 0 2
visibility_off Spatial analysis reveals a novel inflammatory tumor transition state which promotes a macrophage-driven induction of sarcomatoid renal cell carcinoma Allison M. May, Suguru Kadomoto, Claire Williams, Alex C. Soupir, Stephanie The, J. McGue, Tyler Robinson, G. Shelley, Mitchell T Hayes, Brooke L. Fridley, Jodi A. Balasi, Paolo M. Ramos Echevarria, J. Dhillon, S. Nallandhighal, Satwik Acharyya, Liying Chen, Jessica Aldous, Nathan Schurman, Veera Baladandayuthapani, Timothy L. Frankel, S. Salami, Brandon J. Manley, R. Mehra, Aaron M. Udager, Evan T. Keller 2025-06-14 bioRxiv 0 28
visibility_off Multimodal profiling unveils a reversible basal-like breast cancer cell state resistant to AKT inhibition Colin D. H. Ratcliffe, Hugh Sparks, G. L. Boezio, Yuriy Alexandrov, Robert P. Jenkins, A. Le Marois, Pablo Soro-Barrio, Rebecca Lee, S. Strohbuecker, Sudeep Joshi, James K. Ellis, Anne-Marie Fortier, Nils Gustafsson, Ana C. Cunha, Morag Park, J. Macrae, A. Serio, J. Briscoe, Andy Riddell, S. Barry, Chris Dunsby, E. Sahai 2025-06-07 bioRxiv 0 12
visibility_off Developmental Plasticity and Stromal Co-option Shape a Pituitary Neuroendocrine Tumor Transcriptional Continuum Robert C. Osorio, Jun Y. Oh, Jangham Jung, Alexander J. Ehrenberg, A. Saha, Meeki K. Lad, Harmon Khela, Nicole Brennick, P. Giannikopoulos, William W. Seeley, Lea T. Grinberg, Aaron Diaz, M. Aghi 2025-06-24 bioRxiv 0 13
visibility_off Use of STAMP-seq to enable spatial transcriptomics through single-nucleus in situ tagging and exploration of relationship of dynamic plasma cell modules and immunotherapy response in non-small cell lung cancer. Yitong Pan, Huan Yan, Jinhuan Han, Rui Wu, Xingyong Ma, Ying Guan, Keyu Li, Qingquan Wei, Guangxin Zhang, Shaozhuo Jiao, Yongchang Zhang, Chenxi Tian 2025-06-01 Journal of Clinical Oncology 0 3
visibility_off A Single-cell and Spatially Resolved Cell Atlas of Human Esophageal Squamous Cell Carcinoma Yong Shi, Ke An, Yu Qi, Xinhan Zhang, Yueqin Wang, Xuran Zhang, Shaoxuan Zhou, Ouwen Li, Yanan Song, Jiayi Zhou, Yue Du, Mingyang Hou, Yun-Gui Yang, QuanC. Kan, Xin Tian 2025-06-03 bioRxiv 0 6
visibility_off Single-cell and spatial transcriptome analyses reveal tumor heterogeneity and immune remodeling involved in pituitary neuroendocrine tumor progression Wan Su, Zhang Ye, Jifang Liu, K. Deng, Jinghua Liu, Huijuan Zhu, Lian Duan, Chen Shi, Linjie Wang, Yuxing Zhao, Fengying Gong, Yi Zhang, Bo Hou, Hui You, Feng Feng, Qing Ling, Yu Xiao, Yongdong Guo, Wenyi Fan, Sumei Zhang, Zixin Zhang, Xiaomin Hu, Yong Yao, Chunhong Zheng, Lin Lu 2025-05-30 Nature Communications 0 24
visibility_off Mapping and reprogramming microenvironment-induced cell states in human disease using generative AI Amir Akbarnejad, Lloyd Steele, D. Jafree, Sebastian Birk, M. Sallese, K. Rademaker, Adam Boxall, Ben Rumney, Catherine Tudor, Minal Patel, M. Prete, Stanislaw Makarchuk, Tong Li, Heather Stanley, A. Foster, Kenny Roberts, Andrew L. Trinh, C. E. Villa, G. Testa, S. Mahil, Arash Mehrjou, Catherine Smith, Sattar Vakili, M. Clatworthy, Thomas J. Mitchell, O. Bayraktar, M. Haniffa, M. Lotfollahi 2025-06-26 bioRxiv 0 72
visibility_off Cell simulation as cell segmentation. Daniel C Jones, Anna E. Elz, Azadeh Hadadianpour, H. Ryu, David R. Glass, Evan W. Newell 2025-05-22 Nature methods 0 7
visibility_off Notch3 regulates pericyte phenotypic plasticity in colorectal cancer N. Chalkidi, Athanasia Stavropoulou, V. Arvaniti, Christina Paraskeva, Artemis Monogyiou, Maria Sakkou, Christoforos Nikolaou, V. Koliaraki 2025-06-07 bioRxiv 0 19
visibility_off Bladder cancer subtypes exhibit limited plasticity across different microenvironments and in metastases C. Bernardo, Subhayan Chattopadhyay, Natalie Andersson, P. Eriksson, Benjamin Medle, Lena Tran, Nour Al Dain Marzouka, Adam Mattsson, Aymeric Zadoroznyj, Malin Larsson, F. Liedberg, Mattias Höglund, G. Sjödahl 2025-07-02 Experimental Hematology & Oncology 0 40
visibility_off Differential Assembly of Mouse and Human Tumor Microenvironments T. Courau, Rebecca G. Jaszczak, B. Samad, Emily Flynn, Nayvin W. Chew, Gabriella C. Reeder, Jessica Tsui, A. Ray, Harrison Wismer, Daniel Bunis, Leonard C. Lupin-Jimenez, Noah V. Gavil, David Masopust, John P Graham, Daniel A. Skelly, Xavier Vesco, Edison T. Liu, G. Fragiadakis, A. Combes, Matthew F. Krummel 2025-07-05 bioRxiv 0 24
visibility_off Single-cell spatial transcriptomics reveals immunotherapy-driven bone marrow niche remodeling in AML Gege Gui, Molly A. Bingham, Julius R. Herzog, Abigail Wong-Rolle, Laura W. Dillon, Meghali Goswami, Eddie Martin, Jason Reeves, Sean Kim, Arya Bahrami, Hermann F. Degenhardt, George Zaki, P. Divakar, E. Schrom, Katherine R. Calvo, Christopher S. Hourigan, Kasper D. Hansen, Chen Zhao 2025-07-09 Science Advances 0 16
visibility_off Spatial Transcriptomics in Thyroid Cancer: Applications, Limitations, and Future Perspectives Chaerim Song, Hye-Ji Park, Man S. Kim 2025-06-01 Cells 0 2
visibility_off A Multimodal Spatial and Epigenomic Atlas of Human Adult Lung Topography T. Duong, D. Diep, Kimberly Y. Conklin, Indy Bui, J. Purkerson, Eric Boone, Jacqueline Olness, Sahil Patel, Beverly Peng, Colin Kern, Zoey Zhao, Ravi S. Misra, H. Huyck, J. Verheyden, Zea Borok, Yun Zhang, R. Scheuermann, Quan Zhu, Gail Deutsch, Jim Hagood, Xin Sun, Kun Zhang, Gloria S. Pryhuber 2025-05-23 bioRxiv 0 61
visibility_off Transcriptomic Profiles from Normal and Tumor Tissue Samples Reveal Distinct Venule Populations and Novel Tumor Endothelial Cell Markers in Breast Cancer K. Phoenix, Vijender Singh, Patrick A. Murphy, Kevin P. Claffey 2025-06-27 bioRxiv 0 11
visibility_off Conserved cell state dynamics reveal targetable resistance patterns in ovarian high-grade serous carcinoma A. Pirttikoski, Laura Gall-Mas, Wojciech Senkowski, David Fontaneda-Arenas, Matias Marin Falco, E. Erkan, J. Hynninen, K. Wennerberg, Anna Vähärautio 2025-06-18 bioRxiv 0 60
visibility_off Multimodal single-cell analyses reveal distinct fusion-regulated transcriptional programs in Ewing sarcoma Olivia G. Waltner, April A. Apfelbaum, Emma D. Wrenn, Shruti S Bhise, Sami B. Kanaan, R. Gladden, Mark A. Mendoza, R. Volden, Z. Kronenberg, Anand G. Patel, Michael A Dyer, J. Sarthy, Elizabeth R. Lawlor, Scott N. Furlan 2025-06-24 bioRxiv 0 10
visibility_off Competing Subclones and Fitness Diversity Shape Tumor Evolution Across Cancer Types Haiming Chen, Jingmin Shu, Rekha Mudappathi, Elaine Li, Panwen Wang, Leif Bergsagel, Ping Yang, Zhifu Sun, Logan Zhao, Changxin Shi, Jeffrey P. Townsend, Carlo Maley, Li Liu 2025-06-03 bioRxiv 0 5
visibility_off Spatial profiling of solid tumor microenvironment using imaging mass cytometry with high-plex panels. T. Pfister, J. Y. Chwee, Nick Zabinyakov, Qanber Raza, David Howell, Liang Lim, C. Loh 2025-06-01 Journal of Clinical Oncology 0 3
visibility_off Novel mixed cancer-cell models designed to capture inter-patient tumor heterogeneity for accurate evaluation of drug combinations Sampreeti Jena, Daniel Kim, Adam Lee, Weijie Zhang, Kevin Zhan, Yingming Li, S. Dehm, R. S. Huang 2025-05-16 Research Square 0 45
visibility_off Multiscale modeling predicts dependence of mesenchymally transitioned tumor niche fitness on cell-cell and cell-matrix adhesions C. V. Sai Prasanna, M. Jolly, R. Bhat 2025-06-27 bioRxiv 0 57
visibility_off Role of mutational signatures and clonality assessments in tailoring targeted therapies for lymphoma Andoh Sheikh Atta-ullah, Uche Philip, Sampson Janice Candy 2025-05-30 World Journal of Advanced Research and Reviews 0 0
visibility_off Predicting targeted- and immunotherapeutic response outcomes in melanoma with single-cell Raman Spectroscopy and AI Kai Chang, Mamatha Serasanambati, Baba Ogunlade, Hsiu-Ju Hsu, James Agolia, Ariel Stiber, Jeffrey Gu, Saurabh Sharma, Jay Chadokiya, Amanda Gonçalves, Fareeha Safir, Nhat Vu, Daniel Delitto, Amanda R. Kirane, Jennifer A. Dionne 2025-05-21 bioRxiv 0 10
visibility_off Pan-cancer prediction of tumor immune activation and response to immune checkpoint blockade from tumor transcriptomics and histopathology S. Mukherjee, Sumeet Patiyal, L.R. Pal, Tiangen Chang, Sumona Biswas, S. R. Dhruba, Amos Stemmer, Arashdeep Singh, Abbas Yousefi-Rad, Tien-Hua Chen, Binbin Wang, Denis Marino, Wonwoo Shon, Yuan Yuan, Mark Faries, Omid Hamid, Karen L. Reckamp, B. Waissengrin, Beatriz Ornelas, P. Chu, Salah Boudjadi, L. Ley, Dilara Akbulut, N. El Ahmar, S. Signoretti, D. Braun, Hyunjeong Joo, Hyungsoo Kim, A. Osipov, R. Figlin, J. Bar, I. Barshack, Chi-Ping Day, Karine Sargsyan, A. Apolo, Kenneth D Aldape, Muh-Hwa Yang, Michael B. Atkins, Ze’ev A. Ronai, Danh-Tai Hoang, E. Ruppin 2025-06-30 bioRxiv 0 34
visibility_off ONECUT2 reprograms neuroendocrine fate and is an actionable therapeutic target in small cell lung cancer Mirian Gutiérrez, Irene Zamora, Raquel Iriarte, M. Pajares, Qian Yang, Chen Qian, N. Otegui, J. Fernández-Irigoyen, Enrique Santamaria, N. Alcala, A. Sexton-Oates, L. Fernandez-Cuesta, Miguel Barajas, Alfonso Calvo, Luis M. Montuenga, Beatrice S. Knudsen, Sungyong You, Michael R. Freeman, Ignacio J. Encío, Mirja Rotinen 2025-06-11 Molecular Medicine 0 37
visibility_off Astrocyte reprogramming drives tumor progression and chemotherapy resistance in agent-based models of breast cancer brain metastases Rupleen Kaur, R. Barker-Clarke, Andrew Dhawan 2025-06-06 bioRxiv 0 3
visibility_off Robust statistical assessment of Oncogenotype to Organotropism translation in xenografted zebrafish D. Saucier, Xuexia Jiang, Divya Rajendran, Roshan Ravishankar, Erin Butler, A. Marchetto, R. Kurmasheva, T. G. Grünewald, James F. Amatruda, G. Danuser 2025-06-01 bioRxiv 0 78
visibility_off Low-branching vessel architecture shapes immune cell niches and predicts immune responses in renal cancer M. Toma, Yangping Li, Melina Kehl, Tim Kempchen, L. Esser, Katharina Baschun, S. Leonardelli, Thomas Pinetz, R. Turiello, M. Yong, Natalie Pelusi, Guillermo Altamirano-Escobedo, Eduardo Bayro-Corrochano, Sebastian Kadzik, M. Eckstein, Lukas Flatz, Fabian Hörst, J. Kleesiek, J. Saal, Glen Kristiansen, Manuel Ritter, J. Ellinger, Viktor Grünwald, Niklas Klümper, Alexander Effland, M. Hölzel 2025-06-06 None 0 8
visibility_off Single-Cell Analysis of Meningiomas Reveals Mutation-Associated Tumor and Immune Cell Gene Expression Programs Jose A. Maldonado, Bryce L. Mashimo, Anthony Z. Wang, Rupen Desai, Saad M. Khan, Ngima D Sherpa, Markus I Anzaldua-Campos, Gregory J Zipfel, Albert H. Kim, J. Dowling, Eric C. Leuthardt, Joshua W. Osbun, A. Vellimana, Michael R. Chicoine, Gavin P. Dunn, Allegra A. Petti 2025-05-24 bioRxiv 0 25
visibility_off The genomic and transcriptional landscape of the spinal cord H3K27-altered diffuse midline glioma suggests the potential therapeutic strategy Yiwei Xiao, Mengyao Li, Qiang Gao, Zhihong Qian, Yukui Shang, Linkai Jing, Zili Zhen, Yong Ai, Guihuai Wang, Kehkooi Kee, Wei Zhang 2025-05-29 bioRxiv 0 3
visibility_off Single-cell tumor microenvironment profiling informs a circulating proteome test for the interception of malignant transformation in NF1 nerve sheath tumors Jack Shern 2025-06-18 Research Square 0 0
visibility_off Characterization of breast tumors and the tumor immune landscape in young, diverse participants of the Northern California Breast Cancer Family Registry. Marni Blair McClure, Lise Mangiante, Brennan G. Simon, Clemens L. Weiss, Zhicheng Ma, Jocelyn Koo, J. Ransohoff, E. John, Christina Curtis, Jennifer L Caswell-Jin, A. Kurian 2025-06-01 Journal of Clinical Oncology 0 25
visibility_off Spatial transcriptomic profiling of the tumor microenvironment in EGFR and KRAS mutant non-small cell lung cancer. F. J. Bolte, Nick Natale, Samantha DiBenedetto, Margaret Moore, E. Stelow, Richard Hall, D. Gioeli 2025-06-01 Journal of Clinical Oncology 0 53
visibility_off Single-cell analyses unravel ecosystem dynamics and intercellular crosstalk during gallbladder cancer malignant transformation Zhaobin He, Jianqiang Cao, Xiqiang Wang, Shengbiao Yang, Huijie Gao, Yongzhe Yu, Zequn Di, Cheng Peng 2025-05-16 Hepatology Communications 0 7
visibility_off Stochastic modelling of prostate progenitor architecture Christo Morison, Esther Baena, Weini Huang 2025-06-25 bioRxiv 0 2
visibility_off Dissecting Exosomal-Tumoral-Vascular Interactions of Single Tumor Cells and Clusters Using a Tumoral-Transendothelial Migration Chip. Xuan Zhang, Junjie Bai, Shi-Cheng Fan, Lan-Feng Liang, Xiao Song, M. Nai, Ruiping Zhang, Mingli Chen, Jianhua Wang, C. T. Lim 2025-06-24 ACS nano 0 41
visibility_off The Identification of Novel Prognostic and Predictive Biomarkers in Breast Cancer via the Elucidation of Tumor Ecotypes Using Ecotyper Feng Du, J. Ju, F. Zheng, Song-Lin Gao, Peng Yuan 2025-05-27 Cancer Innovation 0 10
visibility_off CellLENS enables cross-domain information fusion for enhanced cell population delineation in single-cell spatial omics data. Bokai Zhu, Sheng Gao, Shuxiao Chen, Yuchen Wang, Jason Yeung, Yunhao Bai, Amy Y. Huang, Y. Yeo, Guanrui Liao, Shulin Mao, Z. G. Jiang, Scott J Rodig, Ka-Chun Wong, Alex K. Shalek, GP Nolan, Sizun Jiang, Zongming Ma 2025-05-22 Nature immunology 0 13
visibility_off Longitudinal multi-omic profiling uncovers immune escape and predictors of response in multiple myeloma Denis Ohlstrom, William C. Pilcher, Marina E. Michaud, Chaitanya R. Acharya, Sarthak Satpathy, Edgar Gonzalez-Kozlova, R. Jayasinghe, Katherine E. Ferguson, Hope L. Mumme, Shivani Nanda, Yizhe Song, Sowmitri Karthikeya Siddhartha Mantrala, D. Karagkouni, Jessica Schulman, Nick Pabustan, Junia Vieira Dos Santos, Daniel W. Sherbenou, J. Keats, Alex Gout, S. Foltz, A. Laganà, T. Kourelis, Ravi Vij, M. Dhodapkar, D. Avigan, H. Cho, L. Baughn, Ajay Nooka, S. Lonial, Shaji K. Kumar, Mehmet K Samur, Ioannis S. Vlachos, Li Ding, Sacha Gnjatic, George Mulligan, Manoj K. Bhasin 2025-05-31 bioRxiv 0 109
visibility_off Single Cell RNA Sequencing Reveals Gene Expression Continuums Along the Spatial Hierarchy of the Pulmonary Circulation S. Sveiven, C. Knutsen, Fabio Zanini, David N Cornfield, C. Alvira 2025-05-19 bioRxiv 0 24
visibility_off Barcoded viral tracing identifies immunosuppressive astrocyte-glioma interactions. Brian M Andersen, Camilo Faust Akl, Michael A. Wheeler, Zhaorong Li, M. Diebold, Michael Kilian, Joseph M Rone, Aditya Misra, Jessica E. Kenison, Joon-Hyuk Lee, Hong-Gyun Lee, C. M. Polonio, David Merrell, J. Weiss, Lillie Godinez, Gavin Piester, Tomer Illouz, Jessica J Ye, Arianna Ghia, Jazmin Martinez, Elizabeth N. Chung, Léna Srun, Daniel Farrenkopf, Lucas E. Flausino, Anton M Schüle, L. Sanmarco, Federico Giovannoni, Luca Fehrenbacher, M. Charabati, Cristina Gutiérrez-Vázquez, Margaret M Cusick, Prem Prabhakar, Connor C Bossi, Emily Lapinskas, Roni Nowarski, G. Getz, Keith L. Ligon, M. Prinz, E. Chiocca, David A. Reardon, Francisco J. Quintana 2025-06-25 Nature 0 52
visibility_off Immunotyping the Tumor Microenvironment Reveals Molecular Heterogeneity for Personalized Immunotherapy in Cancer D. Zeng, Yunfang Yu, Wenjun Qiu, Q. Ou, Qianqian Mao, Luyang Jiang, Jianhua Wu, Jiani Wu, Huiyan Luo, Peng Luo, Wenchao Gu, N. Huang, S. Zheng, Shaowei Li, Yonghong Lai, Xiatong Huang, Yiran Fang, Qiongzhi Zhao, R. Zhou, Huiying Sun, Wei Zhang, J. Bin, Yulin Liao, Masami Yamamoto, Tetsuya Tsukamoto, Sachiyo Nomura, Min Shi, Wangjun Liao 2025-05-28 Advanced Science 0 45
visibility_off Epithelial state-transitions permit inflammation-induced tumorigenesis E. Jarman, Anabel Martinez Lyons, Yuelin Yao, Aleksandra Rozyczko, S. Waddell, Andreea Gradinaru, Paula Olaizola, Kyle Davies, Rachel V. Guest, Stephanie Röessler, Timothy J. Kendall, Owen J Sansom, A. Khamseh, Luke Boulter 2025-06-27 bioRxiv 0 9
visibility_off Immune Spatial Organization Predicts Metastasis Risk in Aggressive Localized Prostate Cancer David D. Yang, Aya Abdelnaser, Jeremiah Wala, Alexander J Haas, Alfred A Barney, Eddy Saad, Jett Crowdis, Cora A. Ricker, Jihye Park, Martin T King, P. L. Nguyen, T. Choueiri, A. Tewari, Keyan Salari, M. Taplin, Chin-Lee Wu, E. V. Van Allen 2025-05-19 bioRxiv 0 74
visibility_off Spatial profiling reveals unique immune microenvironment in premenopausal triple-negative breast cancer associated with therapy response V. P. Nimbalkar, V. Snijesh, S. Rajarajan, C. Anupama, S. Mahalakshmi, Annie Alexander, Deshica Dechamma, Manju Moorthy, Gopalakrishna Ramaswamy, Rakesh Ramesh, B. Srinath, J. Prabhu 2025-07-10 Journal of Translational Medicine 0 14
visibility_off Spatial transcriptomics and functional mapping of the suppressive TME in primary breast tumor and breast-to-liver metastases. Batul Al-zubeidy, Edgar Gonzalez, A. Baugh, Dominic Zavala, Cheol Park, Matthew Jacobo, Marqus Dela Cruz, Michelle Li, Sabrina Carrel, Elexa Rallos, Michael Press, Evanthia T. Roussos Torres 2025-06-01 Journal of Clinical Oncology 0 14
visibility_off Single-cell transcriptomics reveals metabolic remodeling and functional specialization in the immune microenvironment of bone tumors Jun Chen, Na Cui, Shaokai He, Chun-Yan Xia, Wei-Qing Li 2025-05-16 Journal of Translational Medicine 0 1
visibility_off Label-free single cell phenotyping to determine tumor cell heterogeneity in pancreatic cancer in real-time. Katja Wittenzellner, M. Lengl, S. Röhrl, Carlo Maurer, C. Klenk, A. Papargyriou, Laura Schmidleitner, Nicole Kabella, Akul R Shastri, D. Fresacher, Farid Harb, Nawal Hafez, S. Bärthel, Daniele Lucarelli, Carmen Escorial-Iriarte, F. Orben, R. Öllinger, Ellen Emken, L. Fricke, Joanna Madej, Patrick Wustrow, I. Demir, Helmut Friess, Tobias Lahmer, Roland M. Schmid, Roland Rad, Günter Schneider, Bernhard Kuster, Dieter Saur, O. Hayden, Klaus Diepold, Maximilian Reichert 2025-05-27 JCI insight 1 51
visibility_off Substrate heterogeneity promotes cancer cell dissemination Zuzana Dunajova, Saren Tasciyan, Juraj Májek, J. Merrin, E. Sahai, M. Sixt, É. Hannezo 2025-05-23 bioRxiv 0 58
visibility_off Decoding spatial transcriptomics-based heterogeneity of TME in early-stage invasive pulmonary adenocarcinoma. Xin Liu, Jingyi Tian, Z. Shang, C. Xiang, Fei Teng, Jiajun Zhang, Yuchen Han 2025-06-01 Journal of Clinical Oncology 0 8
visibility_off Deciphering the tumor immune microenvironment: single-cell and spatial transcriptomic insights into cervical cancer fibroblasts Zhiheng Lin, Youwei Zhou, Zhenran Liu, Wenyang Nie, Hengjie Cao, Shengnan Li, Xuanling Li, Lijun Zhu, Guangyao Lin, Yanyu Ding, Yi Jiang, Zuxi Gu, Lianwei Xu, Zhijie Zhao, Hua-Bao Cai 2025-07-05 Journal of Experimental & Clinical Cancer Research : CR 0 9
visibility_off Interactions between glioblastoma and myeloid cells Yuting Li, Yuhong Chen, Kai Cai, Yujuan Qin, Xi Wang, Bo Zhang, Lin Shi, Zonglin He, Jiasheng Wang, Jiecun Long, Yishun Zeng, Qiong Gong 2025-06-24 Frontiers in Cell and Developmental Biology 0 0
visibility_off Spatial omics technology potentially promotes the progress of tumor immunotherapy. Zhen Lan, Yuanyuan Yang, Lingling Li, Chaoguan Wang, Zhenqiang Sun, Qiming Wang, Yang Liu 2025-06-02 British journal of cancer 0 5
visibility_off Patterns of intra- and inter-tumor phenotypic heterogeneity in lethal prostate cancer. Martine P. Roudier, Roman Gulati, Erolcan Sayar, Radhika A Patel, Micah Tratt, Helen Richards, Paloma Cejas, Miguel Muñoz Gomez, Xintao Qiu, Yingtian Xie, B. Hanratty, Samir Zaidi, Jimmy L. Zhao, M. Adil, Chitvan Mittal, Yibai Zhao, R. Dumpit, Ilsa Coleman, J. Low, Thomas W Persse, Patricia Galipeau, John K. Lee, Maria S Tretiakova, Meagan Chambers, F. Vakar‐López, Lawrence D. True, Marie E Perrone, Hung-Ming Lam, Lori Kollath, Chien-Kuang C. Ding, Stephanie Harmon, Heather H. Cheng, Evan Y. Yu, R. Montgomery, Jessica E. Hawley, Daniel W. Lin, Eva Corey, M. Schweizer, Manu Setty, G. Ha, Charles Sawyers, C. Morrissey, Henry Long, Peter S Nelson, Michael C. Haffner 2025-06-10 The Journal of clinical investigation 0 56
visibility_off Integrative single-cell and spatial transcriptomics uncover ELK4-mediated mechanisms in NDUFAB1+ tumor cells driving gastric cancer progression, metabolic reprogramming, and immune evasion Yuwei Sun, Wenyang Nie, Zhikai Xiahou, Xiaojing Wang, Wenjia Liu, Zongkai Liu, Zhiheng Lin, Zhaidong Liu 2025-07-04 Frontiers in Immunology 0 9
visibility_off Transcriptomic Analyses of Ovarian Clear Cell Carcinoma Spheroids Reveal Distinct Proliferative Phenotypes and Therapeutic Vulnerabilities Bartlomiej Kolendowski, Sylvia Cheng, Yudith Ramos Valdés, Trevor G. Shepherd, G. DiMattia 2025-05-27 Cells 0 34
visibility_off Spatial transcriptomic profiling from over 300 leiomyosarcoma samples. Ryan A Denu, Zhao Zheng, Veena Kochat, Yingda Jiang, William I. Padron, D. Ingram, Khalida M Wani, Larissa A Meyer, P. Soliman, R. Ratan, Alexander J. Lazar, E. Keung, Kunal Rai, E. N. Nassif Haddad 2025-06-01 Journal of Clinical Oncology 0 49
visibility_off Patient-Derived Three-Dimensional Lung Tumor Models to Evaluate Response to Immunotherapy Kayla F. Goliwas, Kenneth P. Hough, Sruti Sivan, Sierra L. Single, Sameer S. Deshmukh, Joel L. Berry, Maya Khalil, Benjamin Wei, Yanis Boumber, Mohammad Athar, Aakash Desai, S. Ponnazhagan, James M. Donahue, J. Deshane 2025-05-24 bioRxiv 0 48
visibility_off Spatial transcriptomics from pancreas and local draining lymph node tissue reveals a lymphotoxin-β signature in human type 1 diabetes Miguel A. Medina-Serpas, Maigan A. Brusko, Gregory J. Golden, Martha Campbell-Thompson, Trevor Rogers, A. Posgai, Eline T. Luning Prak, Chengyang Liu, Klaus H. Kaestner, Ali Naji, Michael R. Betts, Lauren M McIntyre, M. Atkinson, Todd M. Brusko 2025-05-30 bioRxiv 0 36
visibility_off Bioelectric and Epigenetic Landscapes in Lateralized Breast Tumors Reveal Distinct Tumor Microenvironment Signatures Sebastián Real, Sergio R. Laurito, Pablo Gonzalez, Oscar Bello, Joao Carvalho, María Roqué 2025-07-04 bioRxiv 0 8
visibility_off CSFeatures improves identification of cell type-specific differential features in single-cell and spatial omics data Rufeng Li, Yongkang Li, Heyang Hua, Zhen Li, Yu Zhang, Yufei Yao, Shengquan Chen, Yungang Xu 2025-05-26 bioRxiv 0 3
visibility_off Spatial immune profiling reveals distinct microenvironments in medullary thyroid carcinoma Maria Eduarda de Castro, Gustavo Forlin de Siqueira, Jean Ferrante Mariano, M. Kizys, L. Ceolin, Fernando Augusto Soares, Rodrigo Natal, Humberto Carneiro, Rodrigo Nalio Ramos, Laura Sterian Ward, Niels Olsen Saraiva Camara, Cleber Pinto Camacho, Flavia de Oliveira Facuri Valente, Susan C. Lindsey, Diego Dias dos Santos, Cristiane Damas Gil, João Roberto Maciel Martins, Rui Monteiro de Barros Maciel, L. L. Cunha 2025-05-21 Frontiers in Immunology 0 20
visibility_off Deciphering the cellular and molecular landscape of cervical cancer progression through single-cell and spatial transcriptomics Peng Xia, Juanhong Zhou, Rong Shen, Degui Wang 2025-05-28 NPJ Precision Oncology 0 4
visibility_off Resolving spatial subclonal genomic heterogeneity of loss of heterozygosity and extrachromosomal DNA in gliomas Michelle G. Webb, Frances Chow, Carmel G. McCullough, Bohan Zhang, John J. Y. Lee, Rania Bassiouni, Norman E. Garrett, Kyle Hurth, J. Carpten, Gabriel Zada, David W. Craig 2025-06-13 Nature Communications 0 75
visibility_off Cancer‐Associated Fibroblasts: Heterogeneity, Cancer Pathogenesis, and Therapeutic Targets Yutao Li, Qingyun Liu, Xilin Jing, Yuqi Wang, Xiaohua Jia, Xing Yang, Kezhong Chen 2025-07-01 MedComm 0 0
visibility_off Multi-pronged analysis of pediatric low-grade glioma and ganglioglioma reveals a unique tumor microenvironment associated with BRAF alterations. S. Zahedi, Kent Riemondy, Tian Liu, A. Griesinger, A. Donson, April A Apfelbaum, Rui Fu, Julian Grandvallet Contreras, M. Crespo, J. DeSisto, Madeline Groat, Emil Bratbak, Adam L Green, Todd C Hankinson, Michael Handler, Rajeev Vibhakar, Nicholas Willard, Nicholas K Foreman, Tzu Phang, Jean M. Mulcahy Levy 2025-06-30 Brain pathology 0 43
visibility_off A dynamic molecular landscape in colorectal cancer progression at single-cell resolution Jianwen Sheng, Nianshuang Li, Shuai Li, Yuman Ye, Yuanhang Liao, Yupeng Zhang, Huan Chen, Mengxian Tu, Guping Zhong, Chaoliang Xiong, Pan Zheng, Yuting Lei, Zekun He, Xingxing He, Yao Zhang, Lei Wang, Xiaolin Gao, Yin Zhu, Jianping Liu, Huizhen Fan 2025-07-01 Journal of Translational Medicine 0 4
visibility_off Pan-cancer immune and stromal deconvolution predicts clinical outcomes and mutation profiles B. Bhinder, Verena Friedl, Sunantha Sethuraman, Davide Risso, Kami E. Chiotti, R. J. Mashl, Kyle Ellrott, Jordan A. Lee, Christopher K. Wong, K. Gyan, Aditya Deshpande, Marcin Imielinski, R. Bareja, Josh Stuart, Myron Peto, K. Hoadley, Alexander J. Lazar, A. Cherniack, Jingchun Zhu, Shaolong Cao, Mark Rubin, Wenyi Wang, Oliver F. Bathe, N. Robine, Li-hua Ding, Peter W. Laird, Wanding Zhou, Hui Shen, V. Thorsson, Jen Jen Yeh, Matthew H. Bailey, Daniel Cui Zhou, X. Peng, M. Goldman, Yongsheng Li, Anil Korkut, Nidhi Sahni, D. N. Hayes, Michael K. A. Mensah, Ina Felau, Anab Kemal, Samantha J. Caesar-Johnson, John A. Demchok, Liming Yang, M. Ferguson, R. Tarnuzzer, Zhining Wang, J. Zenklusen, Adam Alana Andrea Andrew Angela Benjamin Benjamin Brian Margolin Weinstein Sboner Blair Brooks Berman Raph, Adam Margolin, Alana Weinstein, A. Sboner, Andrew Blair, Angela Brooks, Benjamin Berman, Benjamin Raphael, Brian Craft, Dante S. Bortone, David Heimain, David L Gibbs, David Haan, D. Betel, Duncan McColl, Emek Demir, Faeze Brahman, F. Farshidfar, Gaddy Getz, G. Gao, Gordon Robertson, Huy Dinh, Hyo Young Choi, I. Shmulevich, Ioannis Anastopoulous, Jasmine Yang, Jeff Damrauer, Ken Chen, Lauren Sanders, Lee Cooper, Liang-Bo Wang, Matt Reyna, Mike Noble, Mohammed El-Kebir, Molly Zhang, Nicole Yeager, Paul Little, Richard Moffitt, S. Meier, Teresa Swatloski, T. Knijnenburg, Thomas Matthew, Vicky Chen, Vlado Uzunangelov, Xinghua Lu, Yige Wu, Yulia Newton, Zeya Wang, Paul T. Spellman, O. Elemento 2025-07-04 Scientific Reports 0 95
visibility_off Functional genomics and tumor microenvironment analysis reveal prognostic biological subtypes in Mantle cell lymphoma Sunandini Sharma, Roshia Ali, Alyssa Bouska, Dylan Jochum, Meghana Kesireddy, Simeon Mahov, Joseph Lownik, Weiwei Zhang, Waseem G Lone, Mahfuza Afroz Soma, Alicia Gamboa, Vaishnavi Devarkonda, Dalia Elgamal, Atqiya Fariha, Adnan Mansoor, Douglas Stewart, Peter Martin, Brian K. Link, R. Advani, Paul M. Barr, A. Goy, A. Mehta, M. Kamdar, D. Stephens, Veronika Bachanova, L. Smith, Ryan D Morin, P. Pararajalingam, M. Lunning, Kai Fu, Dennis Wiesenberger, Wing C. Chan, J. Khoury, T. Greiner, J. Vose, Akil Merchant, Chengfeng Bi, J. Iqbal 2025-06-27 bioRxiv 0 111
visibility_off Abstract P4-10-26: PRISM high-throughput screening to elucidate how tumor microenvironments modulate drug responses of breast cancer cells Blanche C. Ip, Jillian N. Eskra, Tenzing Sangpo, Ashish Bino George, M. Ronan, M. Rees, Jennifer A. Roth 2025-06-13 Clinical Cancer Research 0 28
visibility_off Cells keep diverse company in diseased tissues. Kieran R. Campbell, A. Goeva 2025-05-16 Cancer research 0 9
visibility_off Single-Cell RNA Sequencing and Inferred Protein Activity Analysis Reveal a Distinct Tumor Phenotype in Early-Onset Colorectal Cancer Patients David A. Cohen, Aleksandar Z Obradovic, Luka Jovanovic, Yosuke Mitani, Tianxia Li, Soobeom Lee, Dechokyab De, Casidhe-Nicole R Bethancourt, Alice Shin, Karen Dunbar, Francesco Cambuli, Christopher Lengner, Ning Li, Caitlin Rogers, Jennifer Ho, Viktoria Jakubikova, Emma Blystone, Yoanna S. Pumpalova, Beatrice Dionigi, Sanja Vickovic, Chia-Wei Cheng, Joel Gabre 2025-05-16 bioRxiv 0 13
visibility_off Integrative Spatial Proteomics and Single-Cell RNA Sequencing Unveil Molecular Complexity in Rheumatoid Arthritis for Novel Therapeutic Targeting Xue Wang, Fei Wang, Archana S. Iyer, Heather Knight, Lori J. Duggan, Yingli Yang, Liang Jin, Baoliang Cui, Yupeng He, Jan Schejbal, Lucy A. Phillips, Bohdan P. Harvey, Sílvia Sisó, Yu Tian 2025-05-22 Proteomes 0 2
visibility_off Single-cell transcriptomics reveals hypoxia-driven iCAF_PLAU is associated with stemness and immunosuppression in anorectal malignant melanoma. Hao Zhang, Lin Gan, Xiaofei Duan, Baojing Tuo, Hao Zhang, Senbo Liu, Yugui Lian, Enjie Liu, Zhenqiang Sun 2025-07-04 Journal of gastroenterology 0 6
visibility_off Epigenetic Heritability of Cell Plasticity Drives Cancer Drug Resistance through a One-to-Many Genotype-to-Phenotype Paradigm. É. Oliveira, Salvatore Milite, J. Fernández-Mateos, George D. Cresswell, Erika Yara-Romero, G. Vlachogiannis, Bingjie Chen, Chela James, Lucrezia Patruno, Gianluca Ascolani, Ahmet Acar, Timon Heide, Inma Spiteri, Alex Graudenzi, G. Caravagna, Andrea Bertotti, Trevor A. Graham, Luca Magnani, Nicola Valeri, A. Sottoriva 2025-06-11 Cancer research 0 40
visibility_off Xenoline-polarized macrophages as an alternative in vitro model of tumor-associated macrophages in glioblastoma Acta Neuropathologica Communications, Christopher D. Willey, Hasan Alrefai, Benjamin Lin, Amr Elkholy, Manoj Kumar, Taylor L. Schanel, Kevin J. Lee, Patricia H. Hicks, Joshua C. Anderson, Gao Guo, Eun-Young Erin Ahn, Ryan Miller 2025-06-28 Acta Neuropathologica Communications 0 4
visibility_off Spatial transcriptomics for profiling the microenvironment of cervical precancer progression from routine H&E slides: Applications for pharmaceutical development. Mario R Castellanos, C. Regan, Seema Khutti, Kai Wang, M. Dhar, Jonathan Preall 2025-06-01 Journal of Clinical Oncology 0 10
visibility_off Switching on the evolutionary potential of pancreatic cancer: the tumor suppressor functions of PBRM1 Luigi Perelli, G. Genovese 2025-06-02 The Journal of Clinical Investigation 0 34
visibility_off Multi-omic analysis of gallbladder cancer identifies distinct tumor microenvironments associated with disease progression. Tao Zhou, Yanhong Wu, Shuai Li, Xinyao Qiu, Erdong Liu, Zhihua Xie, Xuebing Shi, Yani Zhang, Guosheng Ma, Wenbo Guo, Xiang Wang, Kaiting Wang, Xiaomeng Yao, Ji Hu, Siyun Shen, Shuai Yang, Xiaoqing Jiang, Jing Fu, Hongyang Wang, Jin Gu, Lei Chen 2025-06-26 Nature genetics 1 12
visibility_off Mapping the Transcriptional Landscape of Drug Responses in Primary Human Cells Using High-Throughput DRUG-seq Lauren Baugh, Sébastien Vigneau, Srijani Sridhar, Sarah Boswell, George Pilitsis, John Bradley, Olga Allen, Laura M. Rand, Amanda Riccardi, Kelsey Roach, Kevin Lema, Ayla Ergun 2025-06-07 bioRxiv 0 1
visibility_off Advanced Microfluidics for Single Cell-Based Cancer Research. Adriana Carneiro, Marta Aranda Palomer, Margarida Esteves, Carolina Rodrigues, José Maria Fernandes, Francisca Oliveira, Alexandra Teixeira, C. Honrado, Lorena Diéguez, S. Abalde‐Cela, Miguel Xavier 2025-07-11 Advanced science 0 20
visibility_off Identification of tissue-resident adaptive NK cells and their association with reduced mortality across diverse solid tumors. John R Lozada, A. Ali, Christine Luo, Rosemary N. Plagens, A. Elliott, Ella Boytim, Nicholas A Zorko, W. El-Deiry, Elisabeth I. Heath, Akash Patnaik, A. Vanderwalde, Jeffrey S Miller, E. Antonarakis, Frank Cichocki, Justin H Hwang 2025-06-01 Journal of Clinical Oncology 0 30
visibility_off Nuclear Phase Separation Drives NPM1-mutant Acute Myeloid Leukemia Gandhar K. Datar, Elmira Khabusheva, Archish Anand, Joshua Beale, Marwa Sadek, Chun-Wei Chen, Evdokiia Potolitsyna, Nayara Alcantara-Contessoto, Guangyuan Liu, Josephine De La Fuente, Christina Dollinger, A. Guzman, Alejandra G Martell, Katharina Wohlan, A. Maiti, N. Short, S. S. Yi, V. Andresen, Bjørn T. Gjertsen, B. Falini, R. E. Rau, L. Brunetti, Nidhi Sahni, M. Goodell, Joshua A. Riback 2025-05-28 bioRxiv 0 83
visibility_off Unveiling drivers of MHC repression and therapeutic strategies to counter immune evasion in small cell lung cancer. Triparna Sen, Subhamoy Chakraborty, A. Elliott, V. Jethalia, A. Vanderwalde, B. Halmos, D. Demircioglu, D. Hasson 2025-06-01 Journal of Clinical Oncology 0 10
visibility_off Application of single-cell and spatial omics in deciphering cellular hallmarks of cancer drug response and resistance Xiaoxia Cheng, Ting Peng, Tian Chu, Yiqun Yang, Jia Liu, Qinglei Gao, C. Cao, Juncheng Wei 2025-07-02 Journal of Hematology & Oncology 0 16
visibility_off Integration of Bulk and Single-Cell Transcriptomics Reveals BCL2L14 as a Novel IGKC+ T Cell-Associated Therapeutic Target in Breast Cancer. Jiaming He, Aiman Akhtar, Jing Li, Qiang Wei, Yang Yuan, Jianhua Ran, Yongping Ma, Dilong Chen 2025-06-01 Journal of inflammation research 0 3
visibility_off Glioblastoma at the crossroads: current understanding and future therapeutic horizons Shilpi Singh, Devanjan Dey, Debashis Barik, Iteeshree Mohapatra, Stefan Kim, Mayur Sharma, Sujata Prasad, Peize Wang, Amar Singh, Gatikrushna Singh 2025-07-09 Signal Transduction and Targeted Therapy 0 3
visibility_off Deciphering cholangiocarcinoma heterogeneity and specific progenitor cell niche of extrahepatic cholangiocarcinoma at single-cell resolution Chunliang Liu, Xiang Wang, Erdong Liu, Yali Zong, Wenlong Yu, Youhai Jiang, Jianan Chen, Mingye Gu, Zhengyuan Meng, Jingfeng Li, Yang Liu, Yongjie Zhang, Jing Tang, Hongyang Wang, Jing Fu 2025-06-23 Journal of Hematology & Oncology 0 9
visibility_off Spatial Coordinates as a Cell Language: A Multi-Sentence Framework for Imaging Mass Cytometry Analysis Chi-Jane Chen, Yuhang Chen, Sukwon Yun, Natalie Stanley, Tianlong Chen 2025-06-02 ArXiv 0 4
visibility_off Microbiome in cancer metastasis: biological insights and emerging spatial omics methods Marianne Meyers, Charlotte B. A. Stoffels, G. Frache, Elisabeth Letellier, Maureen Feucherolles 2025-06-04 Frontiers in Cellular and Infection Microbiology 0 7
visibility_off Single-Cell profiling reveals targetable malignant T-cell subtypes and immune evasion pathways in Sezary Syndrome M.S.F Beth A. Childs, Ph.D Eslam A. Elghonaimy, Praveen, Ramakrishnan Geethakumari, Kiran A. Kumar, J. F. Merola, M. D. Heather W. Goff, M. Todd A Aguilera, Ph.D Todd 2025-05-21 None 0 7
visibility_off A temporal model of tumor-immune dynamics during the metastatic progression of high-grade serous ovarian cancer Donagh Egan, Kate Glennon, Ann Treacy, Aurelie Fabre, Janet Mccormack, Salisha Hill, Ryan Morrison, Vadim Zhernovkov, Daniel C Liebler, Walter Kolch, Donal J Brennan 2025-06-16 NPJ Precision Oncology 0 5
visibility_off Genotype-integrated single-cell transcriptome analysis reveals the role of DDX41 pR525H in a patient with myelodysplastic neoplasms Hirotaka Matsui, Akiko Nagamachi, Minori Koizumi, Rei Kudo, Masahiko Ajiro, H. Harada, Yuka Harada, Shigeyuki Shichino, Akihide Yoshimi 2025-07-02 Scientific Reports 0 21
visibility_off Deciphering colorectal cancer progression through integrative epigenomic analysis for precision therapeutics. Ghazaleh Tavallaee, Amin Nooranikhojasteh, Elias Orouji 2025-06-01 Journal of Clinical Oncology 0 2
visibility_off Clinical and biological subtypes of follicular lymphoma revealed by tumor and immune cell states. Hengqi Liu, Yingfang Feng, Ning Zhang, Cong Sun, Ning Zhang, Xianhuo Wang, Huilai Zhang 2025-06-01 Journal of Clinical Oncology 0 27
visibility_off Tumor microenvironment heterogeneity and progression mechanisms in intrahepatic cholangiocarcinoma: A study based on single-cell and spatial transcriptomic sequencing. Fengwei Li, Yao Li, Lishan Wang, Lei Xu, Hui Xue, Wenxin Wei, Yong Xia, Lei Wang, Feng Shen, Kui Wang 2025-06-09 Hepatology 0 9
visibility_off Organism-wide spatiotemporal profiling of gene expression utilizing a X-CreERT2/Ai9 tracing system Feiyun Li, Qing Yao, Mingjue Chen, Shuangshuang He, Yi Ran, Jianglong Li, Lijun Lin, Guozhi Xiao 2025-07-03 bioRxiv 0 9
visibility_off Morphology Matters: A Multidimensional Perspective on Cancer Cell Biology Rose Rani 2025-06-30 International Journal for Research in Applied Science and Engineering Technology 0 0
visibility_off Cell painting in activated cells illuminates phenotypic dark space and uncovers novel drug mechanisms of action Matylda Zietek, Akshar Lohith, Derfel Terciano, Beverley Marie Rabbitts, Aswad S. Khadilkar, John B MacMillan, Scott Lokey 2025-05-27 bioRxiv 0 7
visibility_off stTrace: Detecting Spatial-Temporal Domains from spatial transcriptome to Trace Developmental Path Zhangdi Song, Changyu Zheng, Jiaxing Chen 2025-05-23 bioRxiv 0 1
visibility_off Multigenerational cell tracking of DNA replication and heritable DNA damage Andreas Panagopoulos, Merula Stout, Sinan Kılıç, Peter Leary, Julia Vornberger, Virginia Pasti, A. Galarreta, Aleksandra Lezaja, Kyra Kirschenbühler, Ralph Imhof, H. Rehrauer, Urs Ziegler, Matthias Altmeyer 2025-05-21 Nature 1 42
visibility_off SPP1+ Venous Endothelial Cells and CRABP2+ Tumor Cells Contribute to Favorable Body and Tail Pancreatic Ductal Adenocarcinoma Tumor Microenvironment. Yueze Liu, Yifan Fu, Tao Liu, Jun Wang, Zeyu Zhang, Yanan Shi, Zhe Cao, Gang Yang, Hao Chen, W. Luo, Jinxin Tao, Yuanyang Wang, Guihu Weng, Menggang Zhang, Liyuan Ye, Jianchun Xiao, J. Qiu, Taiping Zhang, Hua Huang 2025-06-11 Molecular carcinogenesis 0 28
visibility_off Chromoanagenesis in Osteosarcoma Guozhuang Li, Nan Wu, Jennifer Ghabrial, Victoria Stinnett, Melanie Klausner, Laura A Morsberger, Patty Long, Ezra G. Baraban, J. Gross, Ying S. Zou 2025-06-01 Biomolecules 0 7
visibility_off Dissecting the Immunological Microenvironment of Glioma Based on IDH Status: Implications for Immunotherapy Miyu Kikuchi, Hirokazu Takami, Yukari Kobayashi, K. Nagaoka, Yosuke Kitagawa, Masashi Nomura, Shunsaku Takayanagi, Shota Tanaka, Nobuhito Saito, Kazuhiro Kakimi 2025-07-01 Cells 0 20
visibility_off Diversity of mast cell subpopulations in the tumor microenvironment of colorectal cancer and their prognostic implications Tian-yu Qiao, Chao Ding, Songtao Yu, Wenyang Li, Yonghou Zhao, Guiyu Wang 2025-06-30 Cancer Immunology, Immunotherapy : CII 0 7
visibility_off Molecular Phenotypic Plasticity Informs Possible Adaptive Change of Triple-Negative Breast Cancer Cells In Vivo Md. Iftehimul, P. Muganda, Robert H. Newman, C. J. Rorie, Scott H. Harrison, M. T. Hossain, Misty D. Thomas, Joseph L. Graves, Dipongkor Saha 2025-06-03 bioRxiv 0 8
visibility_off Deciphering Breast Tumor Heterogeneity Through Patient-Derived Organoids and Circulating Tumor Cells Benedetta Policastro, Nikoline Nissen, Carla L. Alves 2025-06-25 Journal of Personalized Medicine 0 1
visibility_off Transcriptome-Wide Analysis of Brain Cancer Initiated by Polarity Disruption in Drosophila Type II Neuroblasts Simona Paglia, P. Morciano, Dario de Biase, F. Giorgi, A. Pession, Daniela Grifoni 2025-05-26 International Journal of Molecular Sciences 0 41
visibility_off Single-cell multi-omic integration analysis prioritizes druggable genes and reveals cell-type-specific causal effects in glioblastomagenesis Y.-F. Huang, K.-L. Huang 2025-07-01 None 0 0
visibility_off Deep learning–powered H&E whole-slide image analysis of endothelial cells to characterize tumor vascular environment and correlate treatment outcome to immunotherapy. Seungeun Lee, Jin Woo Oh, Soohyun Hwang, Jeanne Shen, Sehhoon Park, Hyojin Kim, Y. Chae, Se-Hoon Lee, Yoon-La Choi, Jin-Haeng Chung, Jaewoong Shin, Heon Song, Aaron Valero Puche, D. Yoo, Taebum Lee, Chiyoon Oum, Jeongmi Kim, S. Ali, C. Ock 2025-06-01 Journal of Clinical Oncology 0 32
visibility_off Sketching T cell atlases in the single-cell era: challenges and recommendations. Itana Bojović, António G. G. Sousa, S. Junttila, L. Elo 2025-06-29 Immunology and cell biology 0 14
visibility_off Rational therapeutic targeting of myeloid cells in glioblastoma: challenges and perspectives Faruk Akay, M. Saleh 2025-06-26 Frontiers in Immunology 0 0
visibility_off Microenvironment and Tumor Heterogeneity as Pharmacological Targets in Precision Oncology S. Tonello, Roberta Rolla, Paolo Amedeo Tillio, PP. Sainaghi, Donato Colangelo 2025-06-01 Pharmaceuticals 0 14
visibility_off Abstract P4-09-19: Exploring cellular heterogeneity of localised breast cancers Beata Kiedik, D. Roden, K. Harvey, G. Al-Eryani, Sunny Z. Wu, M. Hui, Sandra O’Toole, Elgene Lim, C. Perou, Alex Swarbrick 2025-06-13 Clinical Cancer Research 0 164
visibility_off Bright-Field Multiplex Immunohistochemistry in Swine PCV2 and PRRSV Lymphadenopathies G. D’Annunzio, L. V. Muscatello, Chiara Tugnoli, Stefano Pesaro, Andrea Luppi, Michelangelo Fiorentino, T. Franceschini, Alessia Grillini, G. Rugna, Giuseppe Sarli, L. Mandrioli 2025-06-01 Animals : an Open Access Journal from MDPI 0 14
visibility_off Accurate Transcription Factor Activity Inference to Decipher Cell Identity from Single‐Cell Transcriptomic Data with MetaTF Yongfei Hu, Yuanyuan Zhu, Guangjue Tang, Ming Shan, Puwen Tan, Ying Yi, Xiyuan Zhang, Man Liu, Xinyu Li, Le Wu, Jia Chen, Hailong Zheng, Yan Huang, Zhuan Li, Xiaobo Li, Dong Wang 2025-05-21 Advanced Science 0 14
visibility_off A Microfluidic Droplet Array Promotes Trastuzumab Sensitivity Exploration of Single Breast Cancer Cells. Junjie Bai, Xuan Zhang, Xing Wei, Hai-Yan Li, Ya-Nan Zhao, Ze-Jun Wang, Ting Yang, Jian-Hua Wang, Mingli Chen 2025-06-16 Small 0 41
visibility_off Comparative analysis of immunohistochemistry and imaging mass cytometry technologies for detection of clinical biomarkers in cancer tissues. Qanber Raza, Smriti Kala, T. Pfister, Liang Lim, David King, C. Loh 2025-06-01 Journal of Clinical Oncology 0 3
visibility_off Roadmap for spatial transcriptomics of HIV in tissues. Qijie Guan, Amare Eshetu, Ya-Chi Ho 2025-07-07 Current opinion in HIV and AIDS 0 6
visibility_off Multi-omics-based subtyping of melanoma suggests distinct immune and targeted therapy strategies Changchang Li, Xiaoqiong Lin, Jinhui Wang, Qiaochu Zhou, Fangfang Feng, Jie Xu 2025-06-12 Frontiers in Immunology 0 2
visibility_off Spatial transcriptomic analysis of 4NQO-induced tongue cancer revealed cellular lineage diversity and evolutionary trajectory Feng Liu, Xiaojun Wu, Shaoqing Yu, Deqiang Cheng, Jun Pan, Xiaodong Wang, Guanzhen Yu, Chaofu Li 2025-07-03 Frontiers in Oncology 0 2
visibility_off Single cell characterization of uterine carcinosarcoma and analysis of transcriptomic shifts in tumor-associated macrophages in metastatic and chemotherapy-treated tumors. C. Nief, Sabrina Zdravkovic, Sahar Nasr, Phoebe Hammer, Brooke Howitt 2025-06-01 Journal of Clinical Oncology 0 7
visibility_off Abstract P5-06-29: Tumor and endothelial cell-specific methylation alterations identified in breast cancer with epigenetic deconvolution Barbara Barbara, Lucas A Salas, Brock C. Christensen 2025-06-13 Clinical Cancer Research 0 2
visibility_off Molecular insights into glioblastoma progression: role of CHCHD2P9 in tumor heterogeneity and prognosis Yanyu Ding, Lizhi Xiao, Xiaoling Zhou, Jiaxin Zhao, Jianli Ke, Hua-Bao Cai, Mengyu Zhao, Cun-Zhi Wang, Tian-Hang Yu, Zhijie Zhao, Yucai Wang, Jiyuan Ke 2025-06-24 Frontiers in Immunology 0 5
visibility_off Improving Cellular Senescence Detection with Weak Gene Markers in Single-Cell RNA-seq vi Iterative Imputation Peng Xu, Hantao Zhang, Siyao Zhu, Yimeng Kong 2025-05-29 bioRxiv 0 2
visibility_off Linking gene expression to tumor microenvironment using H&E features in stomach adenocarcinoma. S. H. Bukhari, F. Vempalli, J. D. Warren, Shyam Aggarwal, Aditya Sarin, Mandeep Singh Malhotra, Rakesh K. Yadav, M. Macha, A. Bhat, Harry Lander, Tariq Masoodi 2025-06-01 Journal of Clinical Oncology 0 37
visibility_off Proneural-Mesenchymal hybrid glioblastoma cells are resistant to therapy and dependent on nuclear import. G. Bourmeau, O. Anezo, Jeremy Raymond, A. Ballestín, C. Pichol-Thievend, J. Reveilles, Adrien Thomas, Lin Wang, Melanie Miranda, Eve Moutaux, S. Liva, V. Ribecco, L. Besse, F. Dingli, D. Loew, Céline Vallot, G. Gargiulo, V. Ravi, Kevin Joseph, G. Seano 2025-07-08 Neuro-oncology 0 52
visibility_off Digital spatial profiling: Mapping tumor responses to radiotherapy in rectal cancer. R. Purcell, Adèle Hegoburu, Mohammad Amer, Arielle Sulit, Frank Frizelle 2025-06-01 Journal of Clinical Oncology 0 5
visibility_off AI-driven transcriptomic classification of glioblastoma: Associations with survival and tumor microenvironment. J. Fernandez-Muñoz, Román Oberti, D. Reardon, Francisco Quintana, Guido Nicolas Molina, M. E. Guerrero-Gimenez 2025-06-01 Journal of Clinical Oncology 0 8
visibility_off The epigenetic regulator TRIM24 controls melanoma cell dedifferentiation and resistance to treatment in melanoma Simon Durand, Félix Boivin, Roxane M. Pommier, L. Barbollat-Boutrand, Maxime Grimont, Félix Pham, Marion Dufeu, Eric Cumunel, Raphaël Schneider, Anthony Ferrari, Anaïs Eberhardt, Stéphane Dalle, J. Caramel 2025-05-24 bioRxiv 0 18
visibility_off Multiscale Modeling Uncovers Macrophage Infiltration and TNF-α Signaling Networks for Targeting in Inflammatory Breast Cancer Tumor Emboli Pritha Pai, Christophe Van Berckelaer, S. V. van Laere, Alexandra Bennion, Theresa Charity, Jinming Yang, F. Bertucci, Peter van Dam, Gregory M Palmer, Shannon McCall, Luc Y. Dirix, Naoto T. Ueno, G. Devi 2025-06-01 bioRxiv 0 42
visibility_off Single nuclear‐spatial transcriptomic sequencing reveals distinct puncture‐induced cell subpopulations in the intervertebral disc of a rat model Guoyan Liang, Jing Tan, Chong Chen, Yuying Liu, Yongyu Ye, Xiaolin Pan, Qiujian Zheng, Yunbing Chang, Feng-Juan Lyu 2025-06-01 Clinical and Translational Medicine 0 5
visibility_off ETS-guided iPSC-endothelial models recapitulate malaria pathogenesis François Korbmacher, Hannah Fleckenstein, Rory K. M. Long, Patryk Poliński, Livia Piatti, Borja López-Gutiérrez, Alina Batzilla, Dennis Crusius, Vikas Trivedi, Miki Ebisuya, Maria Bernabeu 2025-07-02 bioRxiv 0 24
visibility_off Abstract P2-02-06: Molecular heterogeneity in adjacent normal tissue among Chinese breast cancer patients H. Koka, Bin Zhu, Priscilla Lee, Kevin Wang, Avraam Tapinos, Difei Wang, G. M. Tse, Koon-Ho Tsang, Cherry Wu, Chad A. Highfill, Kristine Jones, B. Hicks, A. Hutchinson, Montserrat García-Closas, Stephen Chanock, David C Wedge, L. Tse, Xiaohong R. Yang 2025-06-13 Clinical Cancer Research 0 42
visibility_off Revolutionizing cancer treatment: Navigating the intricate landscape of cellular signaling networks. Hao Zhang 2025-05-26 Advances in clinical and experimental medicine : official organ Wroclaw Medical University 0 0
visibility_off Single-cell analysis links DCUN1D5 to immune remodeling and cisplatin resistance in recurrent osteosarcoma Xin Wu, Woding Deng, Qiangqiang Zhao, Jianbin Xiong 2025-07-08 Communications Biology 0 2
visibility_off SPP1+ tumor-associated macrophages define a high-risk subgroup and inform personalized therapy in hepatocellular carcinoma Wei-Xuan Xu, Yanjun Ye, Jia-Lin Chen, Xin-Ying Guo, Chen Li, Juan Luo, Lin-Bin Lu, Xiong Chen 2025-07-01 Frontiers in Oncology 0 1
visibility_off Integrative Single-Cell and Spatial Transcriptomics Analysis Reveals ECM-remodeling Cancer-associated Fibroblast-Derived POSTN as a Key Mediator in Pancreatic Ductal Adenocarcinoma Progression Yifan Wu, Shuquan Li, Hao Yu, Shan Zhang, Lianghua Yan, Xiao-ya Guan, Wei Xu, Zhen Wang, Ang Lv, Xiuyun Tian, Chunyi Hao, Jianhui Wu 2025-05-27 International Journal of Biological Sciences 0 15
visibility_off Histo-LCM-Hi-C reveals the 3D chromatin conformation of spatially localized rare cells in tissues at high resolution Yixin Liu, Min Chen, Xin Liu, Zeqian Xu, Xinhui Li, Yan Guo, D. Czajkowsky, Zhifeng Shao 2025-06-15 bioRxiv 0 36
visibility_off Cellular hierarchies of embryonal tumors with multilayered rosettes are shaped by oncogenic microRNAs and receptor–ligand interactions Alexander Beck, Lisa Gabler-Pamer, G. Alencastro Veiga Cruzeiro, S. Lambo, Bernhard Englinger, McKenzie L. Shaw, Olivia A Hack, Ilon Liu, Rebecca D. Haase, Carlos A O de Biagi, A. Baumgartner, Andrezza Do Nascimento Silva, M. Klenner, Pia Freidel, Jochen Herms, Louisa von Baumgarten, Joerg-Christian Tonn, N. Thon, K. Bruckner, S. Madlener, L. Mayr, D. Senfter, A. Peyrl, I. Slavc, D. Lötsch, C. Dorfer, Rene Geyregger, N. Amberg, C. Haberler, Norman L Mack, Benjamin Schwalm, Stefan M. Pfister, Andrey Korshunov, Lissa C Baird, Edward Yang, Susan N Chi, S. Alexandrescu, J. Gojo, Marcel Kool, Volker Hovestadt, Mariella G. Filbin 2025-05-26 Nature Cancer 0 43
visibility_off Analysis of an engineered organoid model of pancreatic cancer identifies hypoxia as a contributing factor in determining transcriptional subtypes Natalie Landon-Brace, Simon Latour, Brendan T. Innes, Michelle Nurse, Jose L. Cadavid, I. Co, Cassidy M Tan, Ferris Nowlan, Sibil Drissler, F. Notta, H. Jackson, Gary D Bader, A. McGuigan 2025-07-02 Scientific Reports 0 39
visibility_off The type I collagen paradox in PDAC progression: microenvironmental protector turned tumor accomplice Qian Li, Cheng Yang, Junqiang Li, Ronglin Wang, Jie Min, Yang Song, Haichuan Su 2025-07-04 Journal of Translational Medicine 0 15
visibility_off TET3 facilitates bladder cancer progression through targeted modulation of stemness pathways. Zhiren Cai, Yanqi Xie, Luyao Li, Yuhang Zheng, Xianghui Zhou, Guanghua Zhou, Ganping Wang, Xin Zeng 2025-06-26 Medical oncology 0 2
visibility_off Functional role of GLI2 in cancer-associated fibroblasts for modulation of the fibrotic tumor microenvironment within pancreatic cancer. John Y. Kwon, Renzo E Vera, Maite G. Fernadez-Barrena, Jose M. Falero, Roberto G. Chaparro, Matthew D. Ross, M. D. Toruner, Murat Toruner, Ezequiel J Tolosa, Luciana L Almada, Huocong Huang, Rolf A. Brekken, Martin E Fernandez-Zapico 2025-06-01 Journal of Clinical Oncology 0 23
visibility_off Decoding meningioma prognosis with multi-omics: macrophage diversity, immune-CNV interplay, and novel SPP1-targeted strategies. Hailang Fan, Xiaojie Li, Yaqian Zhao, Lairong Song, Lanlan Sun, Zhen Wu, Junting Zhang, Haikun Zhang, Feifan Zhang, Yingdi Huang, Dake Zhang, Liang Wang 2025-06-16 Journal of neuro-oncology 0 6
visibility_off A 3D patternoid model for the reproducible characterization of invasive phenotypes and drug sensitivity in PDAC Sophie Christin Kurzbach, Violetta Carvajal-Heckele, T. Teshima, Maximilian Reichert, Andreas R. Bausch 2025-05-26 Lab on a Chip 0 14
visibility_off Biological and prognostic insights into the prostaglandin D2 signaling axis in lung adenocarcinoma Qiang Liu, Huiguo Chen, Dongfang Tang, Huibiao Zhang, Shaogeng Chen, Yiran Meng, Boying Zheng, Feifei Liu, Jing Zhou, Wen Zhang 2025-05-22 Frontiers in Pharmacology 0 2
visibility_off Multi-omics analyses reveal interactions between GREM1+ fibroblasts and SPP1+ macrophages in gastric cancer L. Qiu, Xiao Zhao, Sheng Yao, Yang Fei, Y. Gong, Zishan Zhou, Shunchang Jiao, Jianming Xu 2025-06-05 NPJ Precision Oncology 0 3
visibility_off MCT1-mediated histone lactylation modulates lung cancer cell sensitivity to T-cell–mediated killing by influencing mitochondrial dysfunction. Q. Xue, W. Peng, Qiong Zhou 2025-06-01 Journal of Clinical Oncology 0 10
visibility_off Spatiotemporal Transcriptomic Dissection of Tumor-Associated Macrophage Heterogeneity and Dual-Function Molecular Nodes in Pancreatic Ductal Adenocarcinoma Mengfei Li 2025-06-20 Theoretical and Natural Science 0 0
visibility_off Loss of colonic fidelity enables multilineage plasticity and metastasis. Patrizia Cammareri, Michela Raponi, Yourae Hong, C. Billard, Nat Peckett, Yujia Zhu, Fausto D Velez-Bravo, Nicholas T Younger, Donnchadh S Dunican, S. Ö. Pohl, Aslıhan Bastem Akan, Nora J Doleschall, John Falconer, M. White, Jean Quinn, K. Pennel, Roberta Garau, Sudhir B. Malla, P. Dunne, Richard R Meehan, Owen J. Sansom, J. Edwards, Malcolm G Dunlop, Farhat V N Din, Sabine Tejpar, Colin W. Steele, K. B. Myant 2025-06-04 Nature 0 10
visibility_off HOX gene dysregulation in glioblastoma: a narrative review of current advances Suleyman Hekim, S. Bunda, Shaliman Dilibaerguli, Maierdan Palihati, Yasin Mamatjan 2025-05-20 Discover Oncology 0 20
visibility_off A visual–omics foundation model to bridge histopathology with spatial transcriptomics Weiqing Chen, Pengzhi Zhang, Tu Tran, Yiwei Xiao, Shengyu Li, Vrutant V. Shah, Hao Cheng, Kristopher W Brannan, Keith A Youker, Li Lai, Longhou Fang, Yu Yang, N. Le, Jun-ichi Abe, Shu-hsia Chen, Qin Ma, Ken Chen, Qianqian Song, John Cooke, Guangyu Wang 2025-05-29 Nature Methods 1 24
visibility_off Loss of chromosome Y shapes the immune cell fate with aging in men A. A. Z. Dawoud, L. Green, O. Rackham 2025-06-02 None 0 0
visibility_off 3D Brain Vascular Niche Model Captures Glioblastoma Infiltration, Dormancy, and Gene Signatures. Vivian K. Lee, R. Tejero, Nathaniel Silvia, Anirudh Sattiraju, Aarthi Ramakrishnan, Li Shen, Alexandre Wojcinski, Santosh Kesari, R. Friedel, Hongyan Zou, Guohao Dai 2025-06-19 Advanced science 0 31
visibility_off Dissecting B-cell responses in high grade serous ovarian cancer. Ramya Parameswaran, James Mueller, Katherine C Fuh, J. Zikherman 2025-06-01 Journal of Clinical Oncology 0 27
visibility_off Use of causal modeling to uncover cell-cell communication dynamics in the tumor microenvironment during anti-PD-1 therapy in breast cancer patients. Aodong Qiu, Han Zhang, Joseph Ramsey, Boyang Sun, Bryan Andrews, Kun Zhang, Gregory F. Cooper, Lujia Chen, Xinghua Lu 2025-06-01 Journal of Clinical Oncology 0 8
visibility_off Epithelial cells with high TOP2A expression promote cervical cancer progression by regulating the transcription factor FOXM1 Weisha Sun, Lu Chen, Xiaolin Feng 2025-06-16 Frontiers in Oncology 0 2
visibility_off Single-Cell Multimodal Profiling Reveals a Novel CD26+ Fibroblast Subpopulation in Atherosclerosis. A. Bashore, Johana Coronel, Chenyi Xue, Lucie Y. Zhu, Muredach P. Reilly 2025-06-12 Arteriosclerosis, thrombosis, and vascular biology 0 5
visibility_off Systematic identification and targeting of master regulator checkpoints (MRC) governing tumor microenvironment-mediated immune evasion Pasquale Laise, G. Bosker, Mariana Babor, Xiaoyun Sun, Stuart Andrews, Lorenzo Tomassoni, Andrea Califano, Mariano J. Alvarez 2025-06-01 Journal for Immunotherapy of Cancer 0 7
visibility_off Single-cell RNA sequencing reveals the role of GTF2F2 in ovarian cancer oncogenesis and progression Haiyang Du, Gao Si, Jiqing Si, Xuejie Song, Fuchun Si 2025-05-29 Journal of Ovarian Research 0 2
visibility_off Droplet microfluidics integrated with machine learning reveals how adipose-derived stem cells modulate endocrine response and tumor heterogeneity in ER+ breast cancer. B. O. Ortega Quesada, Calley Chauvin, Elizabeth Martin, Adam Melvin 2025-06-19 Lab on a chip 0 2
visibility_off The Role of the Tumor Microenvironment in Cancer Progression and Metastasis Oseghale, Ikalo David, Ikokwu, Godwin Mmaduabuchi, Ugoagwu, Kingsley Ugonna, Elizabeth Anuoluwa Akintayo, Matthew Gyang, Okiki Nosiru Quadri, Catherine Rono, O. Ralph-Okhiria, Odunvbun Praise 2025-05-29 Journal of Cancer and Tumor International 1 1
visibility_off Proteogenomic characterization of antibody-drug conjugate target expression profiles in transcriptional subtypes of small cell lung cancer. Edwin Lin, Mitch Singstock, Sanad Alhushki, Sameer S. Deshmukh, Changde Cheng, Kayla F. Goliwas, J. Deshane, A. R. Naqash, Fawzi Abu Rous, Rajat Thawani, Aakash Desai 2025-06-01 Journal of Clinical Oncology 0 45
visibility_off PIWIL2 downregulation in colon cancer promotes transposon activity and pro-tumorigenic phenotypes Alyssa Risner, J. Nair-Menon, Abhinav Cheedipudi, Joe R Delaney, Vamsi K Gangaraju, A. Kourtidis 2025-05-24 bioRxiv 0 22
visibility_off Abstract P5-06-19: Single-cell transcriptional features of human breast tumors and model systems Julia E Altman, Amy L. Olex, Emily K. Zboril, Carson J Walker, David C. Boyd, Rachel K. Myrick, Nicole S Hairr, Jennifer E Koblinski, Madhavi Puchalapalli, Bin Hu, Mikhail G. Dozmorov, X. S. Chen, Yunshun Chen, C. Perou, B. Lehmann, Jane E. Visvader, J. Harrell 2025-06-13 Clinical Cancer Research 0 164
visibility_off Super-resolution imaging informed scRNA sequencing analysis reveals the critical role of GDF15 in rejuvenating aged hematopoietic stem cells Zhongyu Shi, Xuefei Zhang, Huihui Yang, Xiaolu Zheng, Mengxiao Niu, Yongjian Zhang, Pengfei Yuan, Wensheng Wei, Gang Huang, Riguo Fang, Liangyi Chen 2025-05-22 Blood Science 0 14
visibility_off Heterogeneous tissue-specific macrophages orchestrate metastatic organotropism of breast cancer: implications for promising therapeutics Cenzhu Wang, Pinchao Fan, Yu Zhou, Meican Ma, Haowei Zhong, Lei Liu, Qin Chen, Kun Xu 2025-06-20 Journal of Translational Medicine 0 6
visibility_off Boolean network modeling: The first step toward a new understanding of breast cancer heterogeneity. Lia Medina Montalvo, Thelma Escobedo-Tapia, Osbaldo Resendis-Antonio 2025-06-01 Journal of Clinical Oncology 0 1
visibility_off Spatial Proteomics and Transcriptomics Reveal Early Immune Cell Organization in Pancreatic Intraepithelial Neoplasia. Melissa R Lyman, Jacob T. Mitchell, Sidharth Raghavan, Luciane T. Kagohara, Amanda L. Huff, Saurav D Haldar, Sarah M. Shin, Samantha Guinn, Benjamin Barrett, Gabriella Longway, Alexei Hernandez, Erin M Coyne, Xuan Yuan, Lalitya Andaloori, Jiaying Lai, Yun Zhou Liu, Rachel Karchin, Anuj Gupta, A. Kiemen, André Forjaz, Denis Wirtz, Pei-Hsun Wu, Atul Deshpande, Jae W. Lee, T. Armstrong, Nilofer S. Azad, Jacquelyn W. Zimmerman, Laura D. Wood, Robert A Anders, Elizabeth D. Thompson, Elizabeth M. Jaffee, E. Fertig, W. Ho, N. Zaidi 2025-06-26 JCI insight 0 46
visibility_off Distinct evolutionary patterns of tumour-immune escape and elimination determined by extracellular matrix architectures. Yijia Fan, Jason T. George 2025-07-01 Journal of the Royal Society, Interface 0 2
visibility_off Beyond Transposons: TIGD1 as a Pan-Cancer Biomarker and Immune Modulator Merve Gülşen Bal Albayrak, T. Korak, Gurler Akpinar, Murat Kasap 2025-05-30 Genes 0 5
visibility_off Effect of carotuximab (ENV105)-mediated CD105 blockade on osimertinib sensitivity in EGFR-mutant non-small cell lung cancer persister cells. Neil A. Bhowmick, Sandrine Billet, B. Waissengrin, K. Sankar, E. Posadas, Sungyong You, Jean Lopategui, Karen L. Reckamp, Manish Thiruvalluvan 2025-06-01 Journal of Clinical Oncology 0 9
visibility_off Glioblastoma shift from bulk to infiltrative growth is guided by plexin-B2-mediated microglia alignment in invasive niches. Sangjo Kang, Mary E. Ughetta, Jack Y Zhang, Valerie Marallano, Anirudh Sattiraju, Theodore Hannah, Shalaka Wahane, Aarthi Ramakrishnan, Molly E. Estill, N. Tsankova, Li Shen, A. Tsankov, R. Friedel, Hongyan Zou 2025-05-29 Nature cancer 0 31
visibility_off Multi-omics investigation for the tumor immune microenvironment and spatial heterogeneity in hepatocellular carcinoma with PVTT: MyCAFs and NID1 in immune evasion. Tao Han, Zhi Zhu, Heming Li, Kai Li 2025-06-01 Journal of Clinical Oncology 0 5
visibility_off Digital spatial profiling for identification of prognostic genes and molecular subgroups in pleural mesothelioma. Mercedes Herrera, David Lora, M. Peressini, Ramon Yarza, J. Gracia, Álvaro C. Ucero, Magdalena Molero Abraham, A. Enguita, David Gómez-Sánchez, Vera Adradas Rodriguez, Esther Conde, N. Carrizo, Igor Gómez-Randulfe, Roxana Reyes, Noemi Reguart, J. Baena, Helena Bote de Cabo, S. Ponce Aix, L. Paz-Ares, Jon Zugazagoitia 2025-06-01 Journal of Clinical Oncology 0 17
visibility_off Applications and Prospects of Single-Cell RNA Sequencing and Spatial Transcriptomics in Cervical Cancer Yifu Wang, Li Yang, Yunzhi Liu, Huangrong Ma, Miaoying Cai, Chunyu Liang, Li Zhang, Zezhuo Su, Zhiyuan Xu 2025-06-26 BioMed Research International 0 4
visibility_off Dynamic single-cell metabolomics reveals cell-cell interaction between tumor cells and macrophages Yi Zhang, Mingying Shi, Mingxuan Li, Shaojie Qin, Daiyu Miao, Yu Bai 2025-05-16 Nature Communications 1 4
visibility_off Deciphering the impact of intra-tumoral bacterial infiltration on multi-omics profiles in low-grade gliomas Wenshu Li, Zixiang Zhu, Longyuan Li, Xin Wu, Jiaxuan Li, Yi Zhou, Lingwen Gu, Pranathi Vittal, Zhouqing Chen, Zhong Wang, Lingchuan Guo 2025-06-18 Frontiers in Oncology 0 22
visibility_off The Role of Fibroblasts in Melanoma Development: From Tumor Microenvironment Remodeling to Pre-Metastatic Niche Formation Immacolata Belviso, Raffaele Pastore, Aldo Mileo, Emiliano Del Genio, Stefania Boccia, Stefano Palermi, C. Sellitto, M. L. Motti 2025-06-26 International Journal of Molecular Sciences 0 21
visibility_off Zwilch kinetochore protein affects the prognosis of cancer patients by participating in cell proliferation, enhancing cell communication, and reshaping the tumor microenvironment Long Yao, Lianpo Liu, Jinsong Wu, Yunlong Huang, Renquan Zhang, Haoxue Zhang 2025-07-11 Discover Oncology 0 6
visibility_off Integrated multiomics analysis identifies PHLDA1+ fibroblasts as prognostic biomarkers and mediators of biological functions in pancreatic cancer Rui Wang, Guan-Hua Qin, Yifei Jiang, Fu-Xiang Chen, Zi-Han Wang, Linglin Ju, Lin Chen, Da Fu, En-Yu Liu, Su-Qing Zhang, 2025-07-04 Frontiers in Immunology 0 2
visibility_off ImmunoFusion: A Unified Platform for Investigating RNA-seq-Derived Gene Fusions in Cancer and Immunotherapy YanKun Zhao, Shixiang Wang, Shensuo Li, Minjun Chen, Su-Han Jin, U. Gaipl, Hu Ma, Jian-Guo Zhou 2025-06-08 bioRxiv 0 12
visibility_off Analyses of single-cell RNA sequencing uncover the role of intratumoral Helicobacter pylori in shaping tumor progression and immunity in gastric cancer Jiao Xu, Jin Yang, Qi Sun, Jingbo Chang, Fan Wang 2025-05-24 Cancer Immunology, Immunotherapy : CII 0 3
visibility_off Parallel and convergent dynamics in the evolution of primary breast and lung adenocarcinomas Robert A. Gatenby, Jamie K Teer, Kenneth Y. Tsai, Joel S. Brown 2025-05-21 Communications Biology 0 4
visibility_off Single-Cell and Spatial Transcriptomic Profiling of Penile Squamous Cell Carcinoma Reveals Dynamics of Tumor Differentiation and Immune Microenvironment. Hongjian Song, Zhichao Tong, Guixiang Xie, Yaowei Li, Yubo Zhao, Fengpu Fan, Zongzheng Yang, Qing Shi, Qian Zhang, Feng Wen, Hongxue Meng, Haonan Li, Pengyu Guo, Dayong Hou, Zhenwei Zhang, Zhihao Yin, Ziyi Liu, Jianwei Wang, Peng Zhang, Peng Dai, Changfu Li, Lichen Teng, Yangyang Xu, Dexin Ding, Tao Xu, Jianzhang Li, Yongsheng Chen, Yu Qiu, Xiaowei Hu, Wentao Liu, Liang Wu, Roman Nawroth, Guibo Li, Hang Su, Ziqing Deng, Ziqi Wang, Di Wang, Wanhai Xu 2025-06-05 Advanced science 0 10
visibility_off ECM Mechanics Control Jamming-to-Unjamming Transition of Cancer Cells C. Mierke 2025-06-20 Cells 0 40
visibility_off Single-cell and bulk transcriptome analysis identifies B-cell subpopulations and associated cancer subtypes with distinct clinical and molecular characteristics. Yin A He, Li Zhao, Yufen Zheng, Xiaosheng Wang 2025-06-17 Cellular oncology 0 9
visibility_off Cancer-associated fibroblasts promote drug resistance in ALK-driven lung adenocarcinoma cells by upregulating lipid biosynthesis Ann-Kathrin Daum, Lisa Schlicker, M. Schneider, T. Muley, Ursula Klingmüller, Almut Schulze, Michael Thomas, P. Christopoulos, Holger Sültmann 2025-06-16 Cancer & Metabolism 0 56
visibility_off Spatial transcriptomics reveal PI3K-AKT and metabolic alterations in aggressive, treatment-resistant lactotroph pituitary neuroendocrine tumors F. Martinez-Mendoza, Sergio Andonegui-Elguera, E. Sosa-Eroza, Erick Gomez-Apo, Aurea Escobar-España, Carolina González-Torres, Javier Gaytán-Cervantes, Alam Palma-Guzman, Hugo Torres-Flores, Alberto Moscona-Nissan, S. Hinojosa-Alvarez, J. Hernández-Perez, R. Chavez-Santoscoy, G. Guinto, Gerardo Y. Guinto-Nishimura, B. López-Félix, Erick U. Zepeda-Fernandez, Erick M. Estrada-Estrada, V. Correa-Correa, P. A. González-Zavala, Marco A. Asenscio-Montiel, M. A. García-Vargas, Emmanuel Cantu-Chavez, Rocío Arreola-Rosales, Keiko Taniguchi-Ponciano, D. Marrero-Rodríguez, Moises Mercado 2025-05-19 Acta Neuropathologica Communications 0 17
visibility_off Decoding the impact of MMP1+ malignant subsets on tumor-immune interactions: insights from single-cell and spatial transcriptomics Da-Ming Xu, Ling-Xiao Chen, Ting Xue, Xiao-Yu Zhuang, Li-Chao Wei, Hui Han, Miao Mo 2025-05-20 Cell Death Discovery 0 2
visibility_off TumorHoPe2: An updated database for Tumor Homing Peptides Diksha Kashyap, Devanshi Gupta, Naman Kumar Mehta, G. Raghava 2025-05-27 ArXiv 0 31
visibility_off Empowering single-cell genomics with scGPT: Precision clustering and genetic insights into acute lymphoblastic leukemia. Pei-Hsuan Chen 2025-06-01 Journal of Clinical Oncology 0 0
visibility_off Emerin is an effector of oncogenic KRAS-driven nuclear dynamics in pancreatic cancer. Luis F Flores, David L Marks, Renzo E Vera, Ashley N Sigafoos, Ezequiel J Tolosa, Luciana L Almada, David R Pease, M. D. Toruner, Brian Chang, Brooke R Tader, Kayla C LaRue-Nolan, Ryan M. Carr, Rondell P Graham, Catherine E Hagen, Matthew R Brown, Aleksey V Matveyenko, Katherine L Wilson, David W Dawson, Christopher L. Pin, Kyle J Roux, Martin E Fernandez-Zapico 2025-06-10 JCI insight 0 23
visibility_off Signalomics for molecular tumor boards and precision oncology of breast and gynecological cancers. Tatiana V Denisenko, Anna E. Ivanova, A. Koval, Denis N. Silachev, Lee Jia, G. Sukhikh, Vladimir L. Katanaev 2025-06-09 Molecular systems biology 0 21
visibility_off Phase separation of RXRγ drives tumor chemoresistance and represents a therapeutic target for small-cell lung cancer. Hong Wang, Jie Huang, Zhenhua Zhang, Yana An, Huizi Sun, Jiang-liang Chen, Weineng Feng, Hao Duan, Yonggao Mou, Yuanxiang Wang, Peiqing Liu, Huihao Zhou, Hong-Wu Chen, Jian Zhang, Xiaoyun Lu, Junjian Wang 2025-05-20 Proceedings of the National Academy of Sciences of the United States of America 0 20
visibility_off Abstract PS4-09: Spatial Omics Analysis Uncovers Microenvironmental Remodeling and Immune Dynamics in T-DXd Resistant Metastatic Breast Cancer Glori Das, Matthew Vasquez, Jeffrey Zhang, Ji-hoon Lee, Yuan Gao, Jilun Zhang, Jenny Chang, Xiaoxian Li, Hong Zhao, Stephen Wong 2025-06-13 Clinical Cancer Research 0 3
visibility_off Inner and Outer Determinants of Pancreatic Cancer Stem Cells J. C. López-Gil, Diego Navarro, B. Sainz 2025-06-16 Cancer Heterogeneity and Plasticity 0 5
visibility_off Drug resistance and tumor heterogeneity: cells and ensembles Ruth Nussinov, B. R. Yavuz, Hyunbum Jang 2025-05-31 Biophysical Reviews 1 48
visibility_off Dissecting the Cellular Heterogeneity Underlying Liver Diseases Through the Integration of GWASs and Single-Cell RNA Sequencing Miao Zhou, Meng Liu, Chao Xue 2025-06-27 Biology 0 0
visibility_off Origins of Glioblastoma: Initiation and Molecular Signatures of Extreme Aggressiveness A. Tawfeeq, Esraa Jaafar Saheb, Bdoor Staar Abbas 2025-06-04 Iraqi Journal of Cancer and Medical Genetics 0 6
visibility_off Exploring the level of metabolic reprogramming and the role of prognostic factor SF3A3 in hepatocellular carcinoma through integrated single-cell landscape analysis Wanshuo Wei, Yuan Gan, Xindan Zhang, Yumo Chen, Zengfeng Huang, Shuhan Wang, Xiaomei Xie, Yongle Li, Pengtao Qin, Lihe Jiang 2025-05-27 PLOS One 0 1
visibility_off Predicting transposable element-derived neoantigens in ATRX-mutated sarcoma. Simon Cao, Ziyang Wang, B. Nacev 2025-06-01 Journal of Clinical Oncology 0 4
visibility_off The Landscape of SPP1+ Macrophages Across Tissues and Diseases: A Comprehensive Review. Alessandro Palma 2025-05-21 Immunology 1 14
visibility_off Protocol for spatial characterization of ECM collagen-GAG in CRC tumor microenvironment Libby A. Boykin, Sneha Jayashankar, Khidr Kishan K. Budhwani, Brahma Mubarak K. Budhwani, Diya Samal, Chelsea L. Crawford, Allan Tsung, Karim I. Budhwani 2025-06-27 bioRxiv 0 2
visibility_off Applications and prospects of spatial transcriptomics in prostate cancer research: A narrative review Yiling Jin, Zhiming Bai, Gang Wang, Yu Zhang, Jing Chen 2025-05-23 Current Urology 0 4
visibility_off Advanced Detection of Pancreatic Cancer Circulating Tumor Cells Using Biomarkers and Magnetic Particle Spectroscopy Ali Dinari, Hafiz Ashfaq Ahmad, Seungjun Oh, Yun-Hee Kim, Jungwon Yoon 2025-06-12 Nanotheranostics 0 1
visibility_off Comprehensive multi-omics analysis of tandem duplicator phenotypes in non-small cell lung cancer Jie Li, Xinyan Pan, Yanting Bi, Jian Huang, Jun Peng, ChunLing Bai, Jianhong Hou, Yang Chen 2025-06-04 Frontiers in Medicine 0 1
visibility_off Exploring the heterogeneity in glioblastoma cellular mechanics using in-vitro assays and atomic force microscopy Nabila Masud, Md. Hasibul Hasan Hasib, Bayode Ibironke, Charlotte Block, Jayce Hughes, Andrew E. Ekpenyong, Anwesha Sarkar 2025-06-02 Scientific Reports 0 3
visibility_off Opposing lineage specifiers induce a protumor hybrid identity state in lung adenocarcinoma. Gabriela Fort, Henry Arnold, S. Camolotto, Kayla T. O'Toole, Rushmeen Tariq, Anna Waters, Katherine Gillis, Eric L. Snyder 2025-06-12 Genes & development 0 11
visibility_off Instant fluorescence lifetime imaging microscopy reveals mechano-metabolic reprogramming of stromal cells in breast cancer peritumoral microenvironments Julian Najera, Hao Chen, Bianca Batista, Frank Ketchum, Aktar Ali, P. Zorlutuna, Scott Howard, Meenal Datta 2025-05-30 bioRxiv 0 30
visibility_off Regional profiling reveals a distinct glioblastoma infiltrative margin proteome A. Kocoń, Stuart J. Smith, B. Morentin, L. F. Callado, Wayne Carter, Ruman Rahman 2025-07-05 Scientific Reports 0 18
visibility_off Truncated DAPK Variants Restore Tumor Suppressor Activity and Synergize with Standard Therapies in High-Grade Serous Ovarian Cancer Monika Raab, Khayal Gasimli, Balázs Győrffy, Samuel Peña-Llopis, Sven Becker, M. Sanhaji, K. Strebhardt 2025-06-01 Cancers 0 49
visibility_off Whole Exome Sequencing and Single-Cell DNA Sequencing for Assessment of Clonal Heterogeneity and Evolution in Acute Myeloid Leukemia Sadiksha Adhikari, S. Eldfors, Esa Pitkänen, Markus Vähä-Koskela, C. Heckman 2025-06-01 bioRxiv 0 24
visibility_off A Thiopurine-like Mutagenic Process Defines TGCT Subtypes Kevin Brown, Jun Zhong, Adriana Morales Miranda, Mengyan Zhang, Joycelyn Williams, Jacob Williams, Haoyu Zhang, Cheng Liang, Wenbo Li, Bin Zhu, Stephen J Chanock, K. Nathanson, Tongwu Zhang 2025-06-12 bioRxiv 0 104
visibility_off KLF5 controls subtype-independent highly interactive enhancers in pancreatic cancer to regulate cell survival Thomas L. Ekstrom, Zhangshuai Dai, Julia Thiel, Meghana Manjunath, Nadine Schacherer, Bishakha Joyeeta Saha, Yara Souto, A. Abdelrahman, Frank Essmann, Sven Beyes, M. Truty, Meng Dong, Steven A. Johnsen 2025-07-08 bioRxiv 0 42
visibility_off Chemoradiation-Altered Micromilieu of Glioblastoma Cells Particularly Impacts M1-like Macrophage Activation Mona Shojaei, Benjamin Frey, F. Putz, R. Fietkau, Udo S. Gaipl, A. Derer 2025-07-08 International Journal of Molecular Sciences 0 18
visibility_off Integrative analysis of mRNA stability regulation uncovers a metastasis-suppressive program in breast cancer Heather Karner, Tabea Mittmann, Vicky W. Chen, Ashir A. Borah, Andreas Langen, Hassan Yousefi, L. Fish, Balyn W. Zaro, A. Navickas, Hani Goodarzi 2025-06-07 bioRxiv 0 20
visibility_off CRISPR activation screens map the genomic landscape of cancer glycome remodeling John Daly, Lidia Piatnitca, Mohammed Al-Seragi, Vignesh K Krishnamoorthy, S. Wisnovsky 2025-05-27 bioRxiv 1 11
visibility_off The transcriptomic fingerprint of cancer response to Tumor Treating Fields (TTFields) K. Wainer-Katsir, A. Haber, H. Fishman, L. Ding, Michael D. Story, Renfei Du, U. D. Kahlert, L. Mannarino, F. Mirimao, M. Lupi, Maurizio D’Incalci, G. Lavy-Shahaf, Hila Ene, R. Frechtel-Gerzi, Zeina Drawshy, A. Martinez-Conde, E. Dor-On, Y. Porat, M. Giladi, U. Weinberg, Y. Palti 2025-07-10 Cell Death Discovery 0 35
visibility_off Novel Computational Analysis Identifies Cytotoxic Lymphocyte-to-Monocyte Balance in Tumors as a Predictor of Recurrence-Free Survival in Colorectal Carcinoma. Manuel Fernandez, L. Todeschini, Bridget P Keenan, David Rosenberg, Sophia Hernandez, M. Zampese, Guilin Qiao, Tommaso Pollini, A. Maker 2025-06-21 Annals of surgical oncology 0 3
visibility_off Stochastic Graph-Based Models of Tumor Growth and Cellular Interactions J. A. Rodrigues 2025-05-29 AppliedMath 0 2
visibility_off Overcoming intra-tumoral heterogeneity for biomarker discovery in the high-grade serous ovarian cancer proteome Srikanth S. Manda, Maiken M Espersen, C. Mapagu, N. Bouantoun, J. Boros, Y. Chiew, S. Srirangan, Swetansu Pattnaik, Catherine J Kennedy, A. Brand, D. W. Garsed, A. Pandey, D. Bowtell, Natasha Lucas, Dylan Xavier, S. Mahboob, Daniel Bucio-Noble, B. Tully, P. Hains, Phillip J. Robinson, Qing Zhong, R. Reddel, A. Defazio, R. L. Balleine 2025-06-11 NPJ Precision Oncology 0 61
visibility_off Liquid Biopsy in B and T Cell Lymphomas: From Bench to Bedside Mohammad Almasri, Nawar Maher, B. Al Deeban, N. M. Diop, R. Moia, G. Gaidano 2025-05-01 International Journal of Molecular Sciences 0 16
visibility_off Single cell RNA sequencing to identify an Immunogenic cell death related prognostic signature in intrahepatic cholangiocarcinoma Bowen Sha, Fei Tong, Qinghua Shu, Miao Wu, Liang Zhao, Yufeng Zhang 2025-07-02 Scientific Reports 0 5
visibility_off Macrophage activation determines muscle wasting in pancreatic cancer. Chia-Jung Chang, Po-Hsien Huang, Szu-Ying Chen, Pei-Chia Su, Li-Yun Ding, Ya-Chin Hou, Miao-Neng Hung, Kuan-Lin Chen, Ya-Na Wu, Shang-Rung Wu, F. Lin, Peiqi Lu, Hsin-Yi Wu, Yu‐Ju Chen, Chih-Han Chang, Chih-Peng Chang, Daw-Yang Hwang, Yi-Ching Wang, Yanmei Shan 2025-05-29 Oncogene 0 19
visibility_off eEF2K is a poor prognostic factor and novel molecular target in pancreatic cancer: regulating tumor growth and progression via the tumor microenvironment Didem Karakaş, Ahmed Ashour, H. Mokhlis, N. Kahraman, R. Bayraktar, S. Dilmac, N. Kabil, M. Erdoğan, E. Dere, E. Ulukaya, B. Ozpolat 2025-07-07 Cell Death & Disease 0 25
visibility_off Genome reorganization and its functional impact during breast cancer progression K. S. Reed, Andrew J. Fritz, Haley Greenyer, Kerstin Heselmeyer-Haddad, Seth Frietze, Janet Stein, Gary S. Stein, Tom Misteli 2025-05-17 bioRxiv 0 3
visibility_off Chronic compression drives macrophages toward a pathological pro-tumor state Alice Burchett, Hao Chen, Julian Najera, Scott Howard, Meenal Datta 2025-05-17 bioRxiv 0 4
visibility_off Small extracellular vesicle-miR-183-5p mediated crosstalk between tumor cells and macrophages in high-risk pancreatic neuroendocrine tumors. Wuhu Zhang, Junfeng Xu, Dan Huang, Yi Qin, X. Lou, Heli Gao, Zeng Ye, Fei Wang, Yan Wang, Desheng Jing, Guixiong Fan, Q. Zhuo, Chang Xin, Jie Chen, Xiaowu Xu, Xianjun Yu, S. Ji 2025-06-05 Oncogene 0 35
visibility_off Tumor ploidy determination in low-pass whole genome sequencing and allelic copy number visualization using the Constellation Plot Sarah H. Johnson, J. Smadbeck, Roman M. Ženka, Michael T. Barrett, Athanasios Gaitatzes, Arnav Solanki, Angela B. Florio, M. Borad, John C. Cheville, G. Vasmatzis 2025-05-20 Genome Biology 0 62
visibility_off Abstract P3-02-26: Sex-biased cancer cells induce endocrine therapy resistance and immune suppression in male breast cancer Zhishuang Gao, Zehao Wang, Yue Zhou, Xiaoting Chen, J. Xue, Jiong Wu 2025-06-13 Clinical Cancer Research 0 19
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