Spatial-Heterogeneity forecasting

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Manually curated articles on Spatial-Heterogeneity forecasting

Abstract Title Authors Publication Date Journal/ Conference Citation count Highest h-index View recommendations
visibility_off Spatial epitope barcoding reveals subclonal tumor patch behaviors Xavier Rovira-Clavé, Alexandros P. Drainas, Sizun Jiang, Yunhao Bai, M. Baron, Bokai Zhu, Maxim Markovic, Garry L. Coles, M. Bassik, J. Sage, G. Nolan 2021-06-11 bioRxiv 12 105 open_in_new
Abstract Title Authors Publication Date Journal/ Conference Citation count Highest h-index View recommendations

Abstract Title Authors Publication Date Journal/Conference Citation count Highest h-index
visibility_off Quantitative dissection of the metastatic cascade at single colony resolution Chris Roberts, Andy Xu, Xiangwei Fang, Adrienne V Visani, Chien-Wei Peng, Xulei Qin, I. Chan, Madeline Dunterman, David A. Giles, Yaoxuan You, Isabella Guppy, Zhangfan Yang, Albert H. Kim, Alexander H Stegh, Guolan Lu, Feng Chen, L. Ding, Rui Tang 2026-02-23 bioRxiv 0 16
visibility_off Spatial multi-omics unveils the monoclonal origin, neuroendocrine plasticity, and microenvironment niches in combined small cell lung cancer Zhuo Wang, Qing Luo, Jie Wu, Li Lu, Wenjie Ding, Yichun Zhao, Yongfeng Yu, Ruoran Qiu, Ling Zhu, Xinxing Ouyang, Wendi Xuzhang, Shun Lu, Wei Wei, Qihui Shi, Ziming Li 2026-02-02 bioRxiv 0 31
visibility_off Spatial immune hubs defined by conserved activated dendritic cells are remodeled by immunotherapy Tomoyuki Minowa, Sunita Keshari, Shan He, Akata Saha, Alexander S. Shavkunov, Josué E. Pineda, Y. Yeo, Bokai Zhu, Vakul Mohanty, Sonali Jindal, Ken Chen, Kenneth H. Hu, Linghua Wang, GP Nolan, S. Watowich, Matthew M. Gubin 2026-02-11 bioRxiv 0 59
visibility_off Detection of Somatic Point Mutations Directly from Spatial Transcriptomics Enables in vivo Spatiotemporal Lineage Tracing Zhirui Yang, Mengdie Yao, Qing Yang, Yiheng Du, Jinhong Lu, Xing Wu, Jinran Lin, Zhuoyu Qian, Song Hu, Yonghe Xia, Huan Liu, Qiji Zhou, Xiaoyu Ma, Yan Luo, Wenxuan Fan, Weike Pei, Yuhao Xia, Xiuyan Yu, Jing Luan, Qiaoan Zhang, Yue Zhang, Qin Wang, Jianyang Zeng, Yue Zhang, Wenyu Wu, Yanmei Dou 2026-02-06 bioRxiv 0 6
visibility_off Metabolic characterization of tumor-immune interactions by multiplexed immunofluorescence reveals spatial mechanisms of immunotherapy response in non-small cell lung carcinoma (NSCLC) J. Monkman, A. Kilgallon, Clara Lawler, Rafael Tubelleza, T. Aung, J. Warrell, Ioannis A. Vathiotis, Ioannis P Trontzas, N. Gavrielatou, Nay Nwe Nyein Chan, Rotem Czertok, S. Bookstein, K. O’Byrne, E. Markovits, D. Rimm, A. Kulasinghe 2026-02-03 Nature Communications 1 33
visibility_off Predictable clonal hierarchies from restricted progenitors provide a framework for cell type-specific therapies in glioblastoma Elisa Fazzari, Daria J. Azizad, Matthew X. Li, Weihong Ge, Shivani Baisiwala, Dimitri Cadet, Patricia R. Nano, Ryan L. Kan, Travis Perryman, Hong A. Tum, Christopher Tse, Brittney Wick, Carolina Varona Arguelles, Kunal S. Patel, Linda M. Liau, Robert M. Prins, David A. Nathanson, A. Bhaduri 2026-02-23 bioRxiv 0 38
visibility_off Spatial organization of myofibroblastic and complement-secreting CAFs in neuroendocrine tumors H. Niedra, M. L. Spriņģe, Katrine Tiltina, R. Peculis, Rihards Saksis, Jurijs Nazarovs, A. Ozoliņš, Sofija Vilisova, Natalja Senterjakova, Aija Gerina, I. Konrade, A. Puķītis, V. Rovite 2026-02-27 bioRxiv 0 16
visibility_off Distinct clonal dynamics and interactions within the microenvironment near tumor stroma interfaces in rare histologic variants of bladder cancer Luisa Quezada Ziesse, Sophia Bhalla, Antara Biswas, Vignesh Pakiam, Gregory R. Riedlinger, S. Ghodoussipour, Subhajyoti De 2026-03-24 bioRxiv 0 11
visibility_off Integrating single-nucleus barcoding with spatial transcriptomics via Stamp-seq to reveal immunotherapy response-enhancing functional modules in NSCLC Yitong Pan, Huan Yan, Jinhuan Han, Rui Wu, Caiming Xu, Guanglin Lei, Xingyong Ma, Ying Guan, Zhao Li, Junyuan Deng, Keyu Li, Qingquan Wei, Guangxin Zhang, Lei Liu, A. Goel, Zhou Yang, Shaozhuo Jiao, Yongchang Zhang, Chenxi Tian 2026-02-05 Cell Discovery 0 24
visibility_off Deciphering spatial heterogeneity of patient-derived organoids of colorectal tumors for drug discovery Maxim Norkin, Jonathan Bac, Louis McConnell, Christophe Cisarovsky, Marina Alexandre-Gaveta, Sylvie André, Simon Tanaka, Antonia Digklia, Sylke Hoehnel, S. Tissot, Joerg Huelsken, Marianna Rapsomaniki, Raphael Gottardo, K. Homicsko 2026-02-13 bioRxiv 0 8
visibility_off A single-cell atlas linking intratumoral states to therapeutic vulnerabilities across cancers María González-Bermejo, Laura Serrano-Ron, Santiago García‐Martín, Óscar Lapuente-Santana, Ignacio Sanz Portillo, Pablo González-Martínez, G. Gómez-López, Fátima Al-Shahrour 2026-02-19 bioRxiv 0 9
visibility_off Single-molecule spatial genomics reveals the multi-scale organization and plasticity of extrachromosomal DNA in glioblastoma Brett Taylor, Weixiu Dong, Tula Keal, Zhaoning Wang, Bharath Saravanan, Zane A. Gibbs, Yohei Miyake, Daisuke Kawauchi, Raghavendra Vadla, Abhinaba Banerjee, Omar M. Elkassih, Sahana Kashyap, Brandon M. Jones, Kseniya Malukhina, Mahsa Nafisi, Timothy Loe, Joseph Bendik, Tom McCallister, Yang Xie, Lei Chang, Clark Chen, Bing Ren, Frank Furnari, Bogdan Bintu 2026-03-07 bioRxiv 0 7
visibility_off Spatial multi-omics of multiple myeloma uncovers niche-dependent pro-myeloma and immunosuppressive signaling in the bone marrow and extramedullary lesions Denis Ohlstrom, Marina E. Michaud, Mojtaba Bakhtiari, Junia Vieira Dos Santos, William C. Pilcher, Alden Staub, Sarthak Satpathy, Katherine E. Ferguson, Sowmitri Mantrala, S. Kim-Schulze, Zhihong Chen, S. Lonial, Melissa L. Kemp, Daniel W. Sherbenou, A. Laganà, David L. Jaye, A. Nooka, Samir Parekh, Manoj K. Bhasin 2026-03-25 bioRxiv 0 112
visibility_off Convergent stromal and immune remodeling defines spatial tumor dynamics in PARP inhibitor–resistant high-grade serous ovarian cancer K. Imbach, Sergi Cervilla Garcia, D. Grases, Sara Bystrup, Arola Fortian, A. Bernat-Peguera, Mustafa Sibai, Lorena Valdivieso Almeida, Elvira Carballas, P. Guillén Sentís, Margarita Romeo, Eduard Porta Pardo, Jordi Barretina 2026-03-05 bioRxiv 0 8
visibility_off In vivo lineage tracing across human tissues using methylation barcodes in the protocadherin gene cluster Samuel F. Hackett, C. Boniface, Adriana V.A. Fonseca, Akemi D. Ramos-Yamasaki, Caroline J. Watson, H. Bazin, Amanda Tan, H. L. Yu, Lars L P Hanssen, H. Dev, S. Apostolidou, A. Gentry-Maharaj, Sadik C Esener, U. Menon, Jamie R. Blundell 2026-02-23 bioRxiv 0 61
visibility_off Democratised single cell proteomics uncovers tumor associated macrophage signature in CYLD cutaneous syndrome skin tumors Joseph Inns, A. Frey, M. Trost, N. Rajan 2026-02-13 bioRxiv 0 7
visibility_off Local Tumor Microenvironment Niches Correlate With Survival And Immunotherapy Response In Human Glioblastoma F. Petitprez, S. Webb, Gillian M. Morrison, Lorenzo Merotto, Jessica Webb, Yuxuan Xie, Ekin Guney, William A. Weiss, Francesca Finotello, Takanori Kitamura, Steven M Pollard, Jeffery W Pollard 2026-02-23 bioRxiv 0 31
visibility_off Spatial Transcriptomics Meets Histochemistry: Insights from Glioblastoma as a Model System Syuri Tomioka, R. Kitazawa, Ryuma Haraguchi, Yuki Takaoka, Akihiro Inoue, Sohei Kitazawa 2026-02-17 Acta Histochemica et Cytochemica 0 45
visibility_off Advances in Spatial Multi-Omics in Gastric Cancer Hongfei Yan, Yang Liu 2026-03-01 Cells 0 17
visibility_off Longitudinal tumor ecosystem mapping defines glioblastoma treatment trajectories M. Vanmechelen, P. Nazari, J. Beckervordersandforth, C. Caprioli, Djg Leunissen, B. Cole, C. Bravo González-Blas, B. Decraene, Y. De Visser, G. Shankar, M. Verduin, D. Pantano, S. Bevers, T. Moors, S. Zielinski, J. Telang, I. Sebastian, J. Messiaen, Y. Van Herck, E. Geens, D. Eekers, A. Claeys, M. Derweduwe, Hausen A Zur, J. Chui, FM Bosisio, F. Weyns, T. Daenekindt, C. Oosterbos, P. van Eyken, M. Govers, F. Mennens, K. Hovinga, S. De Vleeschouwer, PM Clement, M. Broen, M. Vooijs, R. Sciot, A. Antoranz, J. Pey, E. Speel, A. Hoeben, F. De Smet 2026-03-07 bioRxiv 0 24
visibility_off Uncovering spatial tissue domains and cell types in spatial omics through cross-scale profiling of cellular and genomic interactions R. Yan, Xiaohan Xing, Xun Wang, Zixia Zhou, Md Tauhidul Islam, Lei Xing 2026-02-13 ArXiv 0 4
visibility_off Cross-species single-cell atlases chart progression, therapy-driven remodelling and immune evasion in pancreatic cancer Daniele Lucarelli, Shrey Parikh, Sara Jiménez, C. Schneeweis, D. A. Ngandiri, Philipp Putze, Tina Kos, Deelaka Wellappili, Vanessa Gölling, Manzila Kuerbanjiang, Caylie Shull, Marie Roja Litwinski, Tania Bori Handschuh, Y. Dabiri, M. Zukowska, B. Seidler, Raphael Kfuri-Rubens, S. Bärthel, Lennard Halle, Jeanna M. Arbesfeld-Qiu, Dennis Gong, Günter Schneider, Roland Rad, Chiara Falcomatà, M. Schmidt-Supprian, William L. Hwang, Fabian J. Theis, Dieter Saur 2026-03-23 bioRxiv 0 29
visibility_off Deciphering Treatment Resistance in NSCLC with Single-Cell Sequencing Technology Na Li 2026-02-04 Exploring Science Academic Conference Series 0 5
visibility_off Spatially Integrated Multi-Omics reveals the Multicellular Landscape of Progenitor-Driven Glioblastoma Progression Korbinian Traeuble, Jakob Träuble, Gabriele S. Kaminski Schierle, Matthias Heinig 2026-02-28 bioRxiv 0 2
visibility_off Synora: vector-based boundary detection for spatial omics Jun-Teng Li, Zhuoran Liang, Zhe Fu, Haojie Chen, Yelin Liang, Na Liu, Qingde Wu, Zekun Liu, Yongqiang Zheng, Jihui Huo, Xiaoxing Li, Zhi-Xiang Zuo, Qi Zhao, Zekun Liu 2026-03-02 bioRxiv 0 16
visibility_off Reconstructing multi-scale tissue spatial architecture from single-cell RNA-seq with REMAP Shunzhou Jiang, Kyle Coleman, Zihao Chen, Kaitian Jin, Yunhe Liu, Dong Heon Lee, Tae Hyun Hwang, Rui Xiao, Jin Jin, Christopher A. Walsh, Xuyu Qian, Linghua Wang, Mingyao Li 2026-02-22 bioRxiv 0 17
visibility_off Abstract A036: Spatial multi-omics identifies a tumor microenvironment signature predictive of immunotherapy response in mucosal melanomas S. Ekmekcioglu, Jun Wang, P. Nagarajan, Sungnam Cho, Yunhe Liu, Erin H. Seeley, Jared K. Burks, A. Diab, Linghua Wang 2026-02-18 Cancer Immunology Research 0 59
visibility_off Decoding the archipelago: single-cell biomarkers rechart the molecular geography of acute myeloid leukemia Fengjie Kang, Hailong Yuan, Hamed Soleimani Samarkhazan, F. Tavakoli 2026-02-17 Cell Communication and Signaling : CCS 0 6
visibility_off Benchmarking niche identification via domain segmentation for spatial transcriptomics data Yuxuan Wang, Yuhan Chen, Luqi Yang, Cheng Wang, Jinpu Cai, Hongyi Xin 2026-03-02 bioRxiv 0 2
visibility_off Precision modulation of tumor excitability: Targeting cell phenotypic heterogeneity for next‐generation cancer therapy Zonghao Liu, Xingwu Jiang, Gang Liu, Jian Chen, Kun Song, Xu Li, S. Wong, Ruicheng Shi, Yanyan Liu, Wenbo Bu 2026-02-11 BMEMat 0 28
visibility_off Reconstructing biologically coherent cellular profiles from imaging-based spatial transcriptomics Long Yuan, Youyun Zheng, Shuming Zhang, R. Beroukhim, Atul Deshpande 2026-03-10 bioRxiv 0 151
visibility_off Large-scale single-cell analysis and in silico perturbation reveal dynamic evolution of HCC: from initiation to therapeutic targeting Peng Xia, Shuang Si, Daosen Fu, Luyao Liu, Dongliang Yang, Yanan Guo, Yixiao Tian, Pengfei Ji, Xinyi Yuan, Yingxia Tian, Rong Shen, Degui Wang 2026-01-30 NPJ Precision Oncology 0 8
visibility_off A Pan-Cancer Single-Cell Atlas to Evaluate Tumor Identity, Cell Line Concordance, and Dependency Mapping Rosyli Reveron-Thornton, J. Agolia, Chuner Guo, Maria Korah, CHIA-HSIN Hsu, Peter Y. Xie, Renceh AB Flojo, Andrea E. Delitto, Amanda Gonçalves, Angela D. Tabora, Michael Januszyk, Victoria E. Sanchez, Kevin Nee, Biren Reddy, W. Bobst, Byrne Lee, George A. Poultsides, Amanda R. Kirane, Derrick C. Wan, Jeffrey A. Norton, Edgar G. Engleman, Aaron M. Newman, Michael T. Longaker, Deshka S. Foster, Daniel Delitto 2026-02-24 bioRxiv 0 49
visibility_off Multiplexed high-content imaging uncovers morphological diversity of lymphocyte activation and dysfunction J. Matte, O. Bakker, Madeline A. Ohl, Francesco Cisternino, Andrea J. Manrique-Rincón, Anke Husmann, Florence Lichou, Tong Li, Kwasi Kwakwa, A. Speak, Craig A. Glastonbury, O. Bayraktar, Carla P. Jones, M. Claussnitzer, G. Trynka 2026-02-11 bioRxiv 0 52
visibility_off Spatial analysis reveals the evolving organization of low-grade and high-grade IDH-mutant glioma Rouven Hoefflin, Alissa Greenwald, Noam Galili Darnell, Christopher W. Mount, Yali Tiomkin, D. Simkin, A. Patterson, L. N. G. Castro, Inna Goliand, O. Golani, Kevin Joseph, J. Beck, V. Ravi, M. Kedmi, H. Keren-Shaul, Y. Addadi, M. Neidert, M. Suva, I. Tirosh 2026-03-13 bioRxiv 0 24
visibility_off Single-cell profiling of synchronous multi-organ metastasis reveals a systemic CD74+ lipid-associated macrophage niche driving polymetastatic breast cancer Jacob Insua-Rodríguez, Pascal Naef, Hannah Savage, Isam Adam, Sung Kook Chun, Axel A. Almet, Gautham Prabhakar, S. Kwon, Cassandra G. Sweet, Sevilla F. Hennessey, Angela Lincy Prem Antony Samy, Hamad Alshetaiwi, Maren Pein, Sharmila Mallya, Delia F. Tifrea, Declan M. Edwards, Angela Gomez-Arboledas, Zander Esh, Carina Sandoval, Katrina T. Evans, Alex Hsu, Victoria Mai, Ngoc Bao Kim Nguyen, Erika Zagni, Aaron Longworth, Paige V. Halas, Aaron Simon, Cholsoon Jang, A. Mohyeldin, Robert A. Edwards, Qing Nie, Selma Masri, Kai Kessenbrock, Devon A. Lawson 2026-02-03 bioRxiv 0 13
visibility_off Charting single-cell lineages with synthetic and natural barcodes. Alejo E. Rodriguez-Fraticelli, V. Parreno 2026-02-27 Nature reviews. Genetics 0 21
visibility_off Abstract IA005: Shaping tumor cell plasticity and therapy resistance in glioblastoma A. Iavarone 2026-03-23 Cancer Research 0 2
visibility_off Multiplexed enrichment and tracking of lineages with CloneSweeper Robert J. Vander Velde, Raymond W. S. Ng, Christopher Coté, Sydney M. Shaffer 2026-01-30 bioRxiv 0 6
visibility_off Integrative single-cell, spatial, and bulk transcriptomics reveal an FMR1–FTO axis linked to the immune-excluded phenotype in gastric cancer Chenxi Mao, Miao Zhang, Kangjie Zhou, Yidong Hong, Yiqian Han, Luming Zhao, Mingtong Liang, Jingzhou Zhang, Nan Hu, Fenglei Wu 2026-03-09 Frontiers in Immunology 0 16
visibility_off Principles of subclonal gene dosage across human cancer Solrun Kolbeinsdottir, V. Zachariadis, Muyi Yang, Luuk A. Broeils, Christian Sommerauer, Huaitao Cheng, Xinsong Chen, Yingbo Lin, Matias M. Falco, J. Hynninen, S. Hautaniemi, Yizhe Sun, O. Lohi, M. Heinäniemi, S. E. Brage, D. Sarhan, N. Herold, J. Hartman, H. Helgadottir, Felix Haglund de Flon, Anna Vähärautio, Martin Enge 2026-03-18 bioRxiv 0 47
visibility_off Spatial transcriptomics reveals tumor microenvironment-driven subtypes of invasive lobular carcinoma. M. Serra, Mattia Rediti, L. Collet, F. Lifrange, D. Venet, N. Occelli, A. Papagiannis, D. Vincent, G. Rouas, D. Larsimont, M. Vikkula, F. Duhoux, F. Rothé, C. Sotiriou 2026-02-04 Proceedings of the National Academy of Sciences of the United States of America 0 38
visibility_off Spatially mapping the prostate cancer tumor microenvironment to reveal immune cell drivers of aggressive disease. William S. Chen, Mikhail Dias, C. C. Ding, S. Engler, Sophie Déglise, Aishwarya Subramanian, Haolong Li, Andrea Jacobs, M. Sjöström, Jonathan Chou, Julian C. Hong, Shuang G Zhao, Jeff Simko, Eric J. Small, Alan Ashworth, D. Quigley, P. Carroll, M. Cooperberg, B. Bodenmiller, Felix Y. Feng 2026-03-01 Journal of Clinical Oncology 0 85
visibility_off Abstract PS2-08-13: Spatially resolved tumor subclones in HER2-positive breast cancer L. Cervenkova, M. Rediti, M. Serra, F. Lifrange, C. Tommasi, N. Occelli, X. Wang, D. Vincent, G. Rouas, L. Buisseret, D. Larsimont, F. Libert, A. Lefort, N. van Renne, D. Venet, F. Rothé, C. Sotirou 2026-02-17 Clinical Cancer Research 0 26
visibility_off SPP1+ Macrophage‐POSTN+ Fibroblast‐Endothelial Triad Dictates Immunotherapy Response in Bladder Cancer Huali Chen, Yueqiang Peng, Zhigang Ji, Jie Dong 2026-02-07 The FASEB Journal 0 4
visibility_off Perturbation-guided mapping of colorectal cancer cell states to causal mechanisms Soroor Hediyeh-zadeh, T. S. Toh, O. Dufva, Giuseppe Serra, Rashika Jakhmola, C. Fourneaux, Goncalo Rei Pinto, Zijian Fang, G. Picco, Amanda J. Oliver, R. Elmentaite, Till Richter, Ken To, J. P. Pett, Sarah A. Teichmann, Elham Azizi, Florian Buettner, F. Theis, Mathew J. Garnett 2026-03-24 bioRxiv 0 23
visibility_off A Single-Cell Atlas of Pan-Cancer Liver Metastasis Reveals Dynamic Cellular Programs Driving Metastatic Progression and Immune Modulation Xinyu Tong, Haoyu Chao, Chenlu Zhang, Zhuojin Li, Quan Han, Lishan Wang, N. Wu, Rui Chen, Jian Gao, Shu Zhang, Lei Xu, Ming Chen, hui zhao, Lei Wang, Dijun Chen 2026-03-04 Research 0 16
visibility_off Lineage plasticity: a new dilemma in lung cancer treatment Cainan Huo, Yongxuan Wang, Rujia Li, Xiaofei Xie, W. Lyu, Dingke Chen, Yanqin Sun 2026-02-04 Molecular Biology Reports 0 5
visibility_off Spatial single-cell multi-omics characterization of the tumor microenvironment heterogeneity by HER-2 expression status in gastric cancer Haoxin Peng, Yang Chen, Qian Yao, Yueting Liang, X. Chong, Yiming Luo, Dan Liu, Yakun Wang, Yanyan Li, Xujiao Feng, Yu Sun, J. Gong, Zhi Peng, Xiaotian Zhang, Lin Shen 2026-02-10 Molecular Cancer 0 35
visibility_off Advances in Spatial Transcriptomics for Infectious Disease Research: Insight for Vaccine Development. Taehwan Oh 2026-02-07 Vaccines 0 3
visibility_off Co-evolution of Oncogenic KRAS Signaling and LILRBhigh Macrophages Drives Pancreatic Cancer Recurrence Jianzhen Lin, Zhenzhen Xun, Fangze Qian, Zhigao Chen, Weikang Hu, Wei Liu, Yang Wu, Hao Yuan, L. Yin, Yazhou Wang, Xiao Huang, Yujia Dang, Bin Xiao, Junli Wu, Wen-tao Gao, Jishu Wei, Qiang Li, Min Tu, Jing Zhou, Xu Feng, Zipeng Lu, Li Wen, K. Jiang, Han Liang 2026-03-07 bioRxiv 0 29
visibility_off The Heterogeneity and Function of Stromal Cells in the Tumor Microenvironment Xuehai Wang, Songlin Li, Y. Xue, Xiao Liang, Xuelei Ma, Kun Zhang, Ying Wang 2026-02-12 Research 0 11
visibility_off Unraveling the Tapestry: Lessons from multiomics and spatial biology in hepatocellular cancer. D. Massoudi, Ankit Srivastava, R. Dhanasekaran 2026-02-12 Hepatology 0 42
visibility_off Single-Cell Transcriptomics and Computational Frameworks for Target Discovery in Cancer M. Tarozzi, Nicolas Derus, Stefano Polizzi, C. Sala, Gastone Castellani 2026-02-03 Targets 0 5
visibility_off Optimal transport fate mapping resolves T cell differentiation dynamics across tissues Alec L. Plotkin, Genevieve N. Mullins, William D. Green, Huitong Shi, H. K. Chung, Natalie Stanley, J. J. Milner 2026-02-27 bioRxiv 0 3
visibility_off Cutting‐Edge Technologies to Decode Tumor Microenvironment in Multiple Myeloma Doriana Gramegna, P. Mondelli, S. A. Pappagallo, G. Gargano, M. C. Vegliante, A. Quinto, Bernardo Rossini, Gianvito Pasciolla, A. Roccaro, Michele Cea, Enrico Iaccino, A. Guarini, S. Ciavarella 2026-02-08 Hematological Oncology 0 19
visibility_off Pan-cancer evolution signatures link clonal expansion to dynamic changes in the tumor immune microenvironment. Xinyu Yang, Wei Liu, G. Macintyre, P. van Loo, Florian Markowetz, Peter Bailey, Ke Yuan 2026-03-01 Cell reports 0 71
visibility_off Graph neural network modeling of spatial tumor-immune interactions identifies prognostic cellular niches in non‑small cell lung cancer. Katharina V. Hoebel, James R Lindsay, Jennifer Altreuter, J. Alessi, J. Weirather, I. Dryg, A. Giobbie-Hurder, Zhirou Li, Kun-Hsing Yu, Mark M Awad, Scott J. Rodig, William Lotter 2026-03-07 NPJ precision oncology 0 24
visibility_off A spatially resolved human glioblastoma atlas reveals distinct cellular and molecular patterns of anatomical niches P. Sonpatki, Hyun Jung Park, Y. Xing, Kyung Yeon Han, B. A. Schroeder, Hyeon Jong Yu, Hye Jin Kim, Tamrin Chowdhury, Jong Ha Hwang, Sun Mo Nam, Yoon Hwan Byun, Ho Kang, Joo Ho Lee, , Jae-kyung Won, Tae Min Min Kim, Seung Hong Choi, Ja-Lok Ku, Sungyoung Lee, Ho-Joo Yun, Sung-Hye Park, C. Petritsch, Chul-Kee Park, W. Park, N. Shah 2026-02-20 Nature Communications 2 11
visibility_off Multidimensional tumor heterogeneity and its role in therapeutic resistance Nida Mubin, M. Alnukhali, Nayab Ahmad, J. Driscoll, Anis Ahmad 2026-03-25 Frontiers in Immunology 0 25
visibility_off Modeling mitochondrial inheritance enables high-precision single-cell lineage tracing in humans T. Gao, Chen Weng, Isaac Johnson, Michael Poeschla, Jonas Gudera, Emily King, Christopher Rouya, A. Donovan, Lauren Bourke, Ying Shao, E. Márquez, Rahul Tyagi, Leonard I. Zon, J. Weissman, Vijay G. Sankaran 2026-02-18 bioRxiv 0 22
visibility_off Single-cell omics in tumor lymph node metastasis: mechanisms and therapeutic implications Xuanhao Liu, Xiaoyan Meng, Zhonglong Liu, Liren Cao, Luoman Gan, Yue He 2026-02-02 Molecular Cancer 0 16
visibility_off X-SPATIO: An Explanatory Deep Learning Pipeline for the Prediction and Visualization of Spatially Resolved Biomarker Expression in Triple-Negative Breast Cancer Vibha R. Rao, Madhumala K. Sadanandappa, C. Black, Scott M. Palisoul, Adrienne A. Workman, T. Mackenzie, Xiaoying Liu, Mary D. Chamberlin, L. Vaickus, George J. Zanazzi, Shrey S. Sukhadia 2026-02-11 bioRxiv 0 22
visibility_off Unannotated noncoding transcripts as a source of intratumor heterogeneity in malignant cell states. Xiaolan Zhou, Limin Lin, Yu Chen, Guang Yang, Ting Ni, Zhaozhao Zhao 2026-03-16 Science China. Life sciences 0 8
visibility_off Multi-Modal Metabolomics Deciphers Pan-Cancer Metabolic Landscapes and Spatial-Niche-Specific Alternations. Tingze Feng, Hai-long Piao, Di Chen 2026-02-13 Metabolites 0 11
visibility_off Glioma-Immune crosstalk in the tumor microenvironment: mechanistic insights and therapeutic translation. Saba Yousaf, Sibtain Ahmed, Muhammad Arshad, Khayala Mammadova, Abdul Majid Khokhar, K. F. Fawy, Hamza Rafeeq 2026-03-12 Medical oncology 0 23
visibility_off VDJdive and ECLIPSE enhance single-cell TCR sequencing analysis through the probabilistic resolution of ambiguous clonotypes Ethan Burns, Mercedeh Movassagh, J. Lundell, M. Ye, Zhaochen Ye, G. Oliveira, Rishabh Rout, M. Hugaboom, Kelly Street, David A. Braun 2026-02-20 bioRxiv 0 20
visibility_off Multidimensional Characterization of Tumor-Immune Architecture Reveals Clinically Relevant Classic Hodgkin Lymphoma Subtypes. Tomohiro Aoki, Gerben Duns, Shinya Rai, A. Jiang, Andrew Lytle, Yifan Yin, Makoto Kishida, Michael Yu Li, Cecilia Lee, Denise Smorra, L. Hilton, S. Healy, S. Alig, Mohammad Shahrokh Esfahani, C. Sarkozy, S. Hung, K. Milne, A. Telenius, Luke O Brien, J. Wong, Claudia Cassidy, Manabu Fujisawa, Celia Strong, Talia Goodyear, Chantal Di Vito, Cassandra Luksik, Glenn Edin, Laura Gonzalez, Juan Rangel Patiño, Michael Hong, Shaocheng Wu, Eric Lee, Ali Sakhdari, Katsuyoshi Takata, T. Miyata-Takata, M. Boyle, S. Ben-Neriah, Andrew P. Weng, Alexander Xu, A. Merchant, Andrew Roth, Michael Crump, John Kuruvilla, A. Prica, R. Kridel, D. Huntsman, Brad H Nelson, P. Farinha, R. Morin, A. Alizadeh, K. Savage, David W Scott, Christian Steidl 2026-01-30 Cancer discovery 0 39
visibility_off Long noncoding RNAs in tumor stemness: emerging mechanisms and therapeutic opportunities E. M. Reis, D. S. Bassères 2026-02-25 Frontiers in Genetics 0 28
visibility_off Identifying cancer cell-state transitions from multimodal single-cell data G. Baselli, Alisa Alekseenko, J. Liaño-Pons, Lefteris Sinanis, Eltjona Rrapaj, Marie Arsenian-Henriksson, Vicent Pelechano 2026-03-04 bioRxiv 0 20
visibility_off Comparative cross-methodological analysis of the IDH-wildtype glioblastoma tumor microenvironment Pinar Cakmak, J. Lun, M. Köhler, Michael C. Burger, J. Macas, Tatjana Starzetz, Marcel H. Schulz, Y. Reiss, Karl H. Plate, K. Weber 2026-02-01 Journal of Cancer Research and Clinical Oncology 0 15
visibility_off Morphospatial profiling of cancer-associated fibroblasts reveals architectural subtypes of pancreatic ductal adenocarcinoma Adam S. Bryce, Silvia Martinelli, Leonor Schubert Santana, Leah Officer-Jones, Rachel L Baird, Fiona Ballantyne, K. Rakovic, Ian R Powley, Dina Tataran, David J. Meltzer, Christopher Walsh, F. Duthie, Lucas Farndale, Adalberto Claudio Quiros, Ke Yuan, John Le Quesne, F. Froeling, Stephan B. Dreyer, David K. Chang 2026-02-09 bioRxiv 0 18
visibility_off TiRank prioritizes phenotypic niches in tumor microenvironment for clinical biomarker discovery Yuxiang Lin, Zening Huang, Ziyan Lin, Yating Lin, Jinsheng Song, Ling Luo, J. Chi, Ye Zheng, Youxin Gao, Junjie Lin, Xinyu Li, Chenyu Liang, Lei Zhang, Xinkang Wang, Yuqin Sun, Rongshan Yu, Qiyue Chen, Mengsha Tong 2026-02-13 Genome Medicine 0 18
visibility_off Integrated multicenter single-cell atlas of bladder cancer reveals tumor heterogeneity associated with immunotherapy. Ziwei Wang, Wei He, Maoyu Wang, Meimian Hua, Yidie Ying, Chen Zhang, Qing Chen, Yue Wang, Xufeng Yu, Yi Wang, Huiqing Wang, Zhensheng Zhang, Shuxiong Zeng, Chuanliang Xu 2026-02-03 International journal of surgery 0 17
visibility_off Spatiotemporal profiling reveals distinct dynamics and checkpoint regulations of CAR-T and CAR-NKT cells against solid tumors Yan-Ruide Li, Miao Li, Yuning Chen, Houfu Leng, Yichen Zhu, Xinyuan Shen, D. Croll, Enbo Zhu, Jie Huang, Yu-Chen Wang, Abigail Krall, Heather R Christofk, A. Lusis, Lili Yang 2026-03-12 Signal Transduction and Targeted Therapy 0 141
visibility_off immgenT: A Comprehensive Reference of Convergent T-cell States in the Mouse I. Magill, O. Casey, Dania Mallah, Siba Smarak Panigrahi, Leon Zhou, Olga Barreiro del Rio, Derek J. Bangs, G. Bee, Samantha M. Borys, Josh Choi, Can Ergen-Mehr, Enxhi Ferraj, Maurizio Fiusco, A. Freuchet, Giovanni Galletti, A. Globig, Taylor Heim, C. Imianowski, Rocky Lai, Zhitao Liang, Andrea Lebron Figueroa, Erin D. Lucas, Julia Merkenschlager, Kevin Osum, Shannelle Reilly, Tomoyo Shinkawa, Claire E. Thefaine, Eric S. Weiss, Liang Yang, Shanshan Zhang, A. L. Zorzetto-Fernandes, Josh Croteau, Maria-Luisa Alegre, S. Behar, Rémy Bosselut, L. Brossay, Ken Cadwell, Alexander Chervonsky, Laurent Gapin, Sara E. Hamilton, J. R. Huh, Iliyan Iliev, B. Jabri, Steve Jameson, Marc K. Jenkins, Susan M. Kaech, Daniel H. Kaplan, Vijay K. Kuchroo, Michel Nussenzweig, M. Pepper, David A. Sinclair, Stefani Spranger, Michael Starnbach, Matthew Stephens, Ulrich von Andrian, Nir Yosef, Joonsoo Kang, Mitchell Kronenberg, Ananda W Goldrath, M. Brbić, C. Benoist, D. Zemmour 2026-02-02 bioRxiv 0 71
visibility_off Clonal morphology-guided combination therapies overcome heterogeneity-driven drug tolerance Xiaoxi Li, Ling Liu, Yuanyuan Yan, Mengfang Yang, Lingli Luo, Yong Jiang, Weijun Ren 2026-02-03 bioRxiv 0 4
visibility_off Tumoroid model recreates clinically relevant phenotypes of high grade serous ovarian cancer cells, carcinoma associated fibroblasts, and macrophages. Kathleen M. Burkhard, Ayush Semwal, Ben Johnson, Kristina C. Chu, Riley J. Kranick, Mihika Rayan, A. Difeo, Hui Shen, Geeta Mehta 2026-02-01 Acta biomaterialia 0 39
visibility_off Temporal and spatial composition of the tumor microenvironment predicts response to immune checkpoint inhibition in metastatic TNBC. Noah F. Greenwald, I. Nederlof, Cameron Sowers, D. Ding, Seongyeol Park, Alex Kong, Kathleen E. Houlahan, S. R. Varra, M. De Graaf, V. Geurts, Candace C. Liu, Jolene S Ranek, L. Voorwerk, Michiel de Maaker, Adam Kagel, E. Mccaffrey, Aziz Khan, C. Yeh, C. Fullaway, Zumana Khair, Brennan G. Simon, Yunhao Bai, Hadeesha Piyadasa, Tyler Risom, A. Delmastro, Felix J Hartmann, L. Mangiante, Cristina Sotomayor-Vivas, Sean C. Bendall, T. Schumacher, Zhicheng Ma, Marc Bosse, M. J. van de Vijver, Robert Tibshirani, Hugo M Horlings, Christina Curtis, Marleen Kok, Michael Angelo 2026-02-18 Nature cancer 1 24
visibility_off Neuro-Oncological Perspectives on Cancer Stem Cell Biology in Glioblastoma: Implications for Resection, Recurrence, Targeted Therapy, and Other CNS Tumors Karen Salmerón-Moreno, Karthik Papisetty, C. Kim, Thomas McCaffery, Rommi Kashlan, John N Theodore, Jennifer M Kim, Josephine Buclez, Hithardhi Duggireddy, Justin Maldonado, Hugo Guerrero-Cázares, G. Pradilla, T. Garzon-Muvdi 2026-02-27 Cells 0 30
visibility_off The Spatial Immune Landscape of Mismatch Repair Deficient Endometrial Cancer: Implications for Clinical Outcomes M. Hollenberg, C. Hermann, A. Siegman, W. Liu, C. Loomis, V. Mezzano, S. Selvaraj, J. Tan, T. Zhao, J. Wang, L. Katsnelson, L. Procell, E. Adler, L. Boyd, D. Fenyö 2026-03-14 None 0 14
visibility_off Abstract A037: Single-cell spatial immune architectures shape ctDNA release and prognosis in luminal breast cancer Hengyi Xu, P. Pu, Jiaqi Liu 2026-02-18 Cancer Immunology Research 0 4
visibility_off Same-Slide Spatial Multi-Omics Integration with IN-DEPTH Reveals Tumor Virus-Linked Spatial Reorganization of the Tumor Microenvironment. S. Yiu, Yuzhou Chang, Yao Yu Yeo, Huaying Qiu, Wenrui Wu, Hendrik A. Michel, Xiaojie Jin, Rongting Huang, Shoko Kure, L. Parmelee, Shuli Luo, Precious Cramer, Jia Le Lee, Yang Wang, Zhangxin Zhao, Jason Yeung, N. El Ahmar, Berkay Şímșek, Razan Mohanna, McKayla Van Orden, Wesley S Lu, K. Livak, Shuqiang Li, C. Gao, Melinda Burgess, Colm Keane, J. Shahryari, L. Kingsley, Reem N Al-Humadi, Sahar Nasr, Dingani Nkosi, Sam Sadigh, Philip Rock, Leonie Frauenfeld, Louisa Kaufmann, Bokai Zhu, Ankit Basak, Nagendra Dhanikonda, C. N. Chan, Jordan E. Krull, Y. Cho, Chia-Yu Chen, Jonathan Brown, Hongbo Wang, Bo Zhao, J. Y. Lee, L. Loo, David M. Kim, V. Boussiotis, Baochun Zhang, K. Wei, Alex K. Shalek, B. Howitt, Sabina Signoretti, Christian M. Schürch, F. Hodi, W. R. Burack, Scott J. Rodig, Qin Ma, Sizun Jiang 2026-03-24 Cancer discovery 0 73
visibility_off Spartan: Spatial Activation Aware Transcriptomic Analysis Network M. Faiz, E. Jokl, Rachel E. Jennings, Karen Piper Hanley, A. Sharrocks, Mudassar Iqbal, Syed Murtuza Baker 2026-02-19 bioRxiv 0 12
visibility_off Tumor-immune spatiotemporal co-evolution as a paradigm for overcoming therapy resistance in advanced prostate cancer Jun-Chao Xue, Kaisen Liao, Mengzhao Zhang 2026-03-11 Frontiers in Immunology 0 13
visibility_off The landscape of B and plasma cells in breast cancer: insights from single-cell and spatial transcriptomics. Xing Cai, Jinru Yang, Wenzheng Wang, Xiaolu Zhan, Xiaohan Chen, Dongchen Ji, Kexin Liu, Xue Li, Yuxing Zhang, Cheng Qian, Xiaofang Dai, Guang Yang, Tong Liu 2026-03-12 NPJ breast cancer 0 6
visibility_off Spatial single-cell proteotyping reveals immunotherapy-resistant features within the complex tumor microenvironment of metastatic NSCLC. K. Isomoto, K. Haratani, Takahiro Tsujikawa, Shuta Tomida, Yusuke Makutani, M. Takeda, K. Yonesaka, Kaoru Tanaka, Tsutomu Iwasa, K. Sakai, K. Nishio, Akihiko Ito, Kazuhiko Nakagawa, H. Hayashi 2026-03-10 The Journal of clinical investigation 0 46
visibility_off Single-Cell and Spatial Transcriptomic Profiling Reveals Epithelial Functional States and Fibroblast Phenotypes in Hormone Therapy–Naïve Localized Prostate Cancer Eva Apostolov, D. Roden, H. Holliday, Aurélie S. Cazet, Kate Harvey, Hanyun Zhang, Sunny Z. Wu, S. van der Leij, Hani Jieun Kim, Luke A. Selth, Nenad Bartonicek, G. Al-Eryani, John Reeves, Mengxiao He, J. Lundeberg, Alison J. Potter, J. Kench, Phillip D. Stricker, A. Joshua, Lisa G. Horvath, Alexander Swarbrick 2026-03-25 Cancer Research 0 88
visibility_off AKT3-Driven Epithelial-Mesenchymal Plasticity Governs Ovarian Metastasis in Colorectal Cancer via Tumor Microenvironment Remodeling. Jingyi Shi, Xiaowen Wang, Wutong Zhang, Zhaoya Gao, Chang Zhang, Zixin Tao, Yong Yang, Jingxuan Xu, Haopeng Hong, Yunan Ma, Baojun Chen, Yunfan Wang, D. Ji, Ming Li, Guifang Jia, Jin Gu 2026-02-09 Cancer research 0 16
visibility_off ScRNA-Seq: A way to reveal the potential mechanisms of metastasis in small cell lung cancer. Xiyu Guan, Dengxue Gan, Yongquan Wu, Ying Zhang 2026-02-01 Bulletin du cancer 0 2
visibility_off A Developmental Lectin-Glycan Program Enables Early Breast Cancer Dissemination and Metastatic Onset Ramiro M. Perrotta, Magalí Bertón, Luis E. Valencia Salazar, Yamil D. Mahmoud, J. M. Pérez Sáez, Tomás Dalotto-Moreno, Rosa M. Morales, Sabrina G. Gatto, J. Aguirre-Ghiso, Gabriel A. Rabinovich, M. Salatino 2026-02-25 bioRxiv 0 26
visibility_off Current landscape of single-cell genomics in meningioma. Y. Ellenbogen, A. Landry, Leeor S. Yefet, A. Ajisebutu, Chloe Gui, Phooja Persaud, R. Kaloti, F. Nassiri 2026-03-01 Neuro-oncology advances 0 40
visibility_off Abstract B041: A High-Resolution Integrative Framework for Annotating Cell States Underlying Interpatient Heterogeneity and Tumor Plasticity in Pediatric and Adult Gliomas Annan Timon, Pablo G. Cámara 2026-03-23 Cancer Research 0 19
visibility_off Abstract IA010: Spatiotemporal determinants of KRAS effector signalling in PDAC: From subclonal evolution to stromal–immune niches Dieter Saur 2026-03-05 Cancer Research 0 4
visibility_off Spatial resolution of the metastatic osteosarcoma tumor microenvironment using immunolabeling across murine, canine and human lung Beck J A, J. Pereira, K. I. Silver, McGee L E, N. V. Muhlinen, Rissi D R, Butcher D O, Edmondson E F, C. Mazcko, LeBlanc A K 2026-02-07 Journal of Translational Medicine 0 22
visibility_off Mapping cellular heterogeneity and dynamic interactions in pancreatic cancer. Tatekalva Sandhya, Seema Kumari, Adem Meghapriya, V. Manam, G. Nagaraju, Mundla Srilatha 2026-03-02 Journal of controlled release : official journal of the Controlled Release Society 0 44
visibility_off Evolution of oncogene amplification across 86,000 cancer cell genomes J. Lee, Sohrab Salehi, Matthew A. Myers, Marc J. Williams, Melissa A. Yao, Duaa H. Al-Rawi, J. Lee, Eric G. Sun, Kerstin Thol, Seongmin Choi, Eliyahu Havasov, Asher Preska Steinberg, Michelle Wu, Nicole Rusk, Caitlin Timmons, C. Phua, Stephen Martis, Neeman Mohibullah, P. Manoj, E. Redin, Á. Quintanal-Villalonga, P. Razavi, Sam Aparicio, N. Rekhtman, Viviane Tabar, Mark M. Awad, H. Yu, K. Yu, Andrea Ventura, Andrew Mcpherson, C. Rudin, Sohrab P. Shah 2026-02-13 bioRxiv 0 85
visibility_off Decoding the Glioblastoma Microenvironment: AI-Driven Analysis of Cellular MRI Signatures for Targeted Therapy Yao Sun, Kai Wang, Tian Ye 2026-03-05 Cellular and Molecular Neurobiology 0 5
visibility_off Single-Cell Multi-Tissue T Cell Clonal Dynamics Reveal Distinct Immune Coercion Landscapes in MSI and MSS Colorectal Cancer Qianhe Zhan, Siwen Zhang, Bofu Cao, Lanming Chen, Lu Xie 2026-03-01 International Journal of Molecular Sciences 0 6
visibility_off Abstract PR019: Integrative multi-omic profiling reveals immune microenvironment subtypes in renal cell carcinoma Shirley Hui, Jennifer Pfeil, Daniel Stueckmann, Xiaoyu Zhang, Lisa J. Martin, M. Komisarenko, Jalna Meens, Jennifer L. Gorman, Julia Szusz, Stéphane Chevrier, Sujana Sivapatham, Somi Afiuni, Philip Jonsson, Fred P. Davis, Cristina Penaranda, S. Prendeville, Laurie Ailles, B. Bodenmiller, N. Stransky, Gromoslaw A. Smolen, Gary Bader, Antonio Finelli, Hartland W. Jackson, Keith A. Lawson 2026-03-13 Cancer Research 0 29
visibility_off Atlas-Guided Nanocarrier Strategies Targeting Spatial NTRK2/MAPK Signaling in EGFR-TKI-Resistant Niches of Esophageal Squamous Cell Carcinoma Xiuse Zhang, Xudong Zhang, Xing Jin, Shilei Zhang, Xin Zhao, Hairui Wang, Hui Wang, Lijun Deng, Wenchao Tang, Qizhi Fu, Shegan Gao 2026-01-30 Pharmaceutics 0 5
visibility_off Divergent CD45+ immune landscapes shape the lung tumor microenvironment. S. Dizdarevic, R. Wiegandt, A. Weigert, Thorsten Stiewe, B. Eul, S. Guenther, F. Grimminger, Werner Seeger, S. Pullamsetti, Mario Looso, Kati Turkowski, R. Savai 2026-02-09 Frontiers in immunology 0 50
visibility_off Leukemia stem cell expansion cultures reveal clonal drivers of leukemogenesis and therapy response Indranil Singh, Andrea Polazzi, Alex Maya Pombo, Marta López-Osias, C. Bauer, Maria Guarini, P. Sánchez, Luna Goulet, Carmen Gallardo, Daniel Fernández-Pérez, Robert L. Bowman, Alejo E. Rodriguez-Fraticelli 2026-02-25 bioRxiv 0 21
visibility_off Advancing Cancer Research Through Stochastic Modeling: Insights into Tumor Growth, Evolution, and Treatment Response Tahmineh Azizi 2026-03-03 AppliedMath 0 7
visibility_off Abstract A009: Multicellular modules and tumor programs shape the tumor microenvironment and predict immune checkpoint inhibitor (ICI) response in clear cell renal cell carcinoma (ccRCC) Katsuhiro Ito, S. Kashima, Rishabh Rout, Zhaochen Ye, N. Schindler, David A. Braun 2026-03-13 Cancer Research 0 6
visibility_off High-resolution retrospective single cell lineage tracing with mutable homopolymers P. Cheng, D. Kamenev, Polina Kameneva, Conor Fitzpatrick, Igor Adameyko, P. Kharchenko, Kun Zhang 2026-03-12 bioRxiv 0 12
visibility_off Spatial Interactions of CD103+ Tissue-Resident Memory T Cells in the Tumor Periphery Are Associated with Clinical Outcomes in Triple-Negative Breast Cancer Following Neoadjuvant Chemotherapy. Hyun Lee, Byung-Kwan Jeong, Gyungyub Gong, Miseon Lee, H. Lee 2026-03-18 Cancer research and treatment 0 7
visibility_off Abstract B021: Single-cell lineage tracing to reveal ecDNA dynamics in glioblastoma through treatment Abigail C. Marshall, A. McKenna 2026-03-23 Cancer Research 0 2
visibility_off Ultra-precision deconvolution of spatial transcriptomics decodes immune heterogeneity and fate-defining programs in tissues. Yin Xu, Zurui Huang, Yawei Zhang, Minghui Gong, Zhenghang Wang, Peijin Guo, Feifan Zhang, Jing Yang, Guanghao Liang, Lihui Dong, Renbao Chang, Yu Xia, Haochen Ni, Wenxuan Gong, Boyuan Mei, Yuan Gao, Zhaoqi Liu, Lin Shen, Jian Li, Meng Michelle Xu, Dali Han 2026-03-20 Nature communications 0 24
visibility_off Abstract B058: A Genetically Unbiased In Vivo Platform to Define Therapy-Driven Determinants of Triple-Negative Breast Cancer Brain Metastasis Zachary J. Seeman, Tao Cheng, Mohammed Qaraad, Christopher M. Stehn, David Guinovart, N. A. Temiz, David A. Largaespada, Eric Rahrmann 2026-03-23 Cancer Research 0 12
visibility_off Unraveling pancreatic ductal adenocarcinoma at single-cell resolution with spatial insights: From mechanisms to clinical translation. Haoran Qi, Gaoyuan Lv, Shaobo Zhang, Ruidong Xue, Mingyang Liu 2026-02-01 Cancer letters 1 16
visibility_off Abstract A051: Integrative Single-Cell and Spatial Transcriptomics Reveal Metabolic Reprogramming and Spatiotemporal Transition of Macrophages Driving Immune Suppression in Head and Neck Cancer J. Choi, Hyo Jung Kim, Bok-Soon Lee, Jin Roh, Hyun Goo Woo, Chul-Ho Kim 2026-02-18 Cancer Immunology Research 0 14
visibility_off Abstract PD2-04: Tumor Heterogeneity in the transATAC Breast Cancer Spatial Single Cell Atlas E. Schuster, I. Kleijn, K. Dunne, R. Sardinha, E. O'Neill, G. Latifi, C. Kennedy-Dietrich, N. Jamieson, J. Cuzick, A. Brentnall, M. Dowsett, S. Johnston, N. Turner 2026-02-17 Clinical Cancer Research 0 9
visibility_off Integrated single-cell and spatial transcriptomics uncover SPP1⁺ and HLA-DRB5⁺ macrophages as key modulators of the immune microenvironment in colorectal cancer liver metastasis Shaozuo Xie, Jiayu Li, Shanshan Heng, Jinyu Xiao, Jiajia Chen, Xin Qi 2026-02-19 Journal of Translational Medicine 0 12
visibility_off Spatial single-cell analysis reveals tumor microenvironment signatures predictive of oral cavity cancer outcome. Joni Näsiaho, L. Nissi, S. Ventelä, H. Irjala, Marko Salmi 2026-02-01 Cell reports. Medicine 0 27
visibility_off Single-cell dissection of hepatocellular carcinoma immunity: from heterogeneous subtypes to precision therapeutics Yu Liang, Hemeng Wu, Yunshan Qiu, Qiulian Mo, Peipei Chen, Mingfen Li, Hongsheng Lin 2026-02-11 Frontiers in Immunology 0 6
visibility_off Emerging trends and converging evidence in tumor evolution: A comprehensive review. Chenqi Jin, Weiqi Li, Boqiang Liu, Lu-Qi Cao, S. Stefan, Luoxi Yuan, Xin Yu, Liang Shi, Hong Yu 2026-02-01 Drug resistance updates : reviews and commentaries in antimicrobial and anticancer chemotherapy 1 17
visibility_off Integrative Single-Cell and Spatial Transcriptomic Analysis Reveals MAIT Cell Dysfunction in Relapsed HCC Geon Woo Park, Hayoung Jang, T. Nguyen-Phuong, Hyunsung Nam, C. Park, G. Choi, Sook-Hyang Jeong, Jin-Wook Kim, Chang Jin Yoon, Jae Hwan Lee, Hyun Je Kim 2026-02-01 Journal of Hepatocellular Carcinoma 0 5
visibility_off X-Cell: Scaling Causal Perturbation Prediction Across Diverse Cellular Contexts via Diffusion Language Models Chloe Wang, Mehran Karimzadeh, Neal G. Ravindra, Lexi R. Bounds, Nader Alerasool, Ann Huang, Shihao Ma, D. Gulbranson, Haotian Cui, Yongju Lee, Anusuya Arjavalingam, Elliot J. MacKrell, M. Wilken, Jieming Chen, Benjamin W. Herken, J. A. Weber, Massimo M. Onesto, Bárbara González-Terán, Nicole F. Leung, S. Shi, Byron J. Smith, Sharon Lam, Adam Barner, P. Wright, Elizabeth M. Rumsey, Soohong Kim, Rene V. Sit, Adam J. Litterman, Ci Chu, Bo Wang 2026-03-20 bioRxiv 0 21
visibility_off Abstract PR009: Spatial single-cell transcriptomics reveal targetable macrophage subsets associated with antiangiogenic therapy resistance in renal cell carcinoma Xiande Liu, Hongchao He, Jingjing Liu, Xuesong Zhang, A. Hoang, T. Karpinets, K. Sircar, Eric Jonasch 2026-03-13 Cancer Research 0 47
visibility_off Tertiary lymphoid structures in the era of cancer therapy Isaias Hernández-Verdin, A. Dimberg, D. Thommen, Camilla Engblom, Lucile Vanhersecke, Karina Silina, Tullia C. Bruno, Wolf H. Fridman, Paola Nisticò, C. Sautès-Fridman 2026-02-11 Journal of Experimental & Clinical Cancer Research : CR 1 89
visibility_off Single-cell transcriptomic profiling combined with Mendelian randomization illuminates molecular drivers of bladder cancer Junrui He, Zhuoying Jiang, S. Peng, Lijuan Peng, Zhongyou Xia, Ting Ma, Xiaojun Tan, Qiongxian Long, Ji Wu 2026-03-04 Molecular Genetics and Genomics 0 3
visibility_off Comparison of different computational frameworks for metabolic modeling from single-cell transcriptomics data in glioblastoma Mirte De Temmerman, Boris Vandemoortele, Vermeirssen Vanessa 2026-03-03 bioRxiv 0 2
visibility_off Neutrophils in glioblastoma: orchestrators of the tumor microenvironment and immune evasion Enes Demir, Elham Rahmanipour, Mohammad Ghorbani, Khushal A Gupta, Maryam Zeinali, Michael Karsy 2026-02-03 Molecular Biology Reports 1 7
visibility_off Abstract B056: Near-real-time detection of epithelial killing supports BiTE evaluation directly from fresh NSCLC and breast tumors David M. Graham, L. Contreras-Ruiz, M. Rivera, Jacob Layton, K. Hightower 2026-02-18 Cancer Immunology Research 0 18
visibility_off Targeting SPP1 + TAMs associated with liver metastasis reverses immunosuppression and synergizes with immunotherapy in colorectal cancer Yilin Lin, Zhihua Chen, Shidong Zhao, Long Zhao, Changjiang Yang, Mingxuan Zhu, Yingjiang Ye, Shan Wang, Zhanlong Shen 2026-03-01 Journal for ImmunoTherapy of Cancer 0 10
visibility_off Glioblastoma Jaffer A. Yousofi 2026-03-09 Undergraduate Research in Natural and Clinical Science and Technology Journal 0 0
visibility_off A new cancer progression model: from synthetic tumors to real data and back Daniela Volpatto, S. G. Contaldo, Simone Pernice, Marco Beccuti, F. Cordero, R. Sirovich 2026-02-09 bioRxiv 0 3
visibility_off Integrating patient-derived organoids and multi-omics to decode spatiotemporal therapeutic resistance Cize Gao, Jianing Chen, Leilei Wu, Boyue Pang, Chunxia Su 2026-03-09 Organoid Research 0 4
visibility_off Spatiotemporal and metabolic heterogeneity of tumor-associated macrophages in glioblastoma: from single-cell insights to therapeutic targeting Jun Lu, Siwen Chu, Shisong Wang, Siqi Wang, Zhongxue Yu, Zihao Yan, Guangyang Ji, Hongxu Zhou, Jun Wang, Chen Zhu 2026-03-26 Frontiers in Cell and Developmental Biology 0 17
visibility_off Discrete Transcriptional States Define Biphasic Immune Response and Dynamic CMS Transitions in Colorectal Cancer Khalid Ishani, Dechen Wangmo, Atef Ali, Travis Gates, Zejie Yan, Ava P. Gustafson, Ella Boytim, K. Storey, P. Goffredo, Justin Hwang, Subbaya Subramanian 2026-02-06 bioRxiv 0 54
visibility_off scAmp analyzes focal gene amplifications at single-cell resolution Matthew G. Jones, Natasha E. Weiser, King L. Hung, Xiaowei Yan, Sangya Agarwal, J. Luebeck, Aditi Gnanasekar, B. Howitt, Ellis J Curtis, Kevin Yu, John C. Rose, Katerina Kraft, Valeh Valiollah Pour Amiri, Leena Satpathy, V. Bafna, P. Mischel, Howard Y. Chang 2026-02-15 bioRxiv 0 76
visibility_off An Integrated Pipeline for Cell-Type Annotation, Metabolic Profiling, and Spatial Communication Analysis in the Liver using Spatial Transcriptomics Chi Zhang, Jun Li, Owen Luo, Xiangsheng Fu, Tallulah Andrews, Gregory R Steinberg, Dongdong Wang 2026-02-10 bioRxiv 0 7
visibility_off Single-Cell Analysis of Chemotherapy-induced Remodeling Reveals CD276-driven Basal-like Chemoresistance in Pancreatic Cancer. Yao Zhang, Yanhua Du, Jiaxin Wang, Danshu Wang, Judong Li, Jing Zhang, Yizhou Zhao, Sishen Sun, Hongxiang Sun, Jingjing Qi, R. Bao, Chenghao Shao, Minmin Zhang, Xiangyi He, Ling Zhang, Chunhua Zhou, Dong Wang, Bing Su, Duowu Zou, Youqiong Ye 2026-02-01 Gastroenterology 0 18
visibility_off Abstract IA01: Spatial and molecular control of tumor immune microenvironments R. Ostuni 2026-02-18 Cancer Immunology Research 0 8
visibility_off Abstract LB-C012: Immune-Like Circulating Tumor Cells and Large Extracellular Vesicles in Metastatic Breast Cancer Stephanie N. Shishido, Peter Kuhn, James B. Hicks, Nikki Higa, Amin Naghdloo, Mohamed Kamal, Dean Tessone, Valerie Hennes, Audrey Limb, Andrés Rivera, Rafael Nevarez, A. Kolatkar, C. Tweed, Adam I. Riker, Young Lee, Lorraine Tafra, Jeremy G. Perkins, Craig D. Shriver 2026-03-18 Cancer Immunology Research 0 31
visibility_off Bridging cancer cell-intrinsic driver genes and -extrinsic cell-cell communication with Driver2Comm. Runzhi Xie, Junping Li, Yuxuan Hu, Lin Gao 2026-02-17 PLoS computational biology 0 10
visibility_off Crosstalk between SPP1+ macrophages and ITGA5+ fibroblasts promotes hepatocellular carcinoma metastasis. Ting Tang, Yubo Li, Ni Xiyun, Hao Wu, Lu Fan, Xintong Zhang, Jingjia Chang, Zhigao Ou, Tian Yang, H. Chen, Li Niu, Fengfeng Jia, Guoqing Zhao, Li Li, Ming Liu, Jian Zhu 2026-02-26 Hepatology communications 0 8
visibility_off Abstract B057: Targeting Glioblastoma Cell State Plasticity for Enhanced Therapeutic Efficacy S. Cirigliano, R. Singhania, J. Nicholson, Isha Monga, C. Haywood, A. Muley, S. Giacobetti, Howard A. Fine 2026-03-23 Cancer Research 0 10
visibility_off Redefining the immune microenvironment of gliomas in the era of single-cell genomics. L. G. Gonzalez Castro, Vrishabhadev Sathish Kumar, M. Suva, Tyler E. Miller 2026-03-01 Neuro-oncology advances 0 20
visibility_off Dynamic optimization of extrachromosomal DNA copy number drives tumour evolution Aditi Gnanasekar, Shu Zhang, Ellis J Curtis, Jun Tang, Vishnu Shankar, I. Wong, Xiaowei Yan, Rui Li, Lu Yang, Melissa A. Yao, Andrea Ventura, Benjamin Werner, Howard Y. Chang, P. Mischel 2026-03-23 bioRxiv 0 17
visibility_off Multimodal Spatial Transcriptomics Reveals the Developing Human Liver Niche at Single-Cell Resolution Michael Bailey, M. Leon, I. Rosso, Carolyn Sangokoya 2026-02-01 Gastro Hep Advances 0 11
visibility_off High-resolution spatial transcriptomics of adult and pediatric human liver with Visium HD Faizan Hasan, Rachel D Edgar, Jawairia Atif, Diana Nakib, C. Thoeni, A. Ricciuto, Blayne A. Sayed, Ian McGilvray, Gary D. Bader, S. Macparland 2026-02-18 bioRxiv 0 26
visibility_off Vascular normalization by erianin unleashes CAR-T immunotherapy in glioblastoma Shiling Zhou, Shuyi Qian, Bowen Sun, Peng Shi, Shanni Guo, Changrui Yang, Jiwei Zhang, Y. Gong, Fan Yang 2026-02-12 Angiogenesis 1 9
visibility_off MSTN and TCF12 as Candidate Immunometabolic Signatures in Glioma-Associated Foam Cells: Insights from Integrated Multi-Omics Analysis Xu Liu, Zhuo Song, Zhijia Sun, Chen Liu, X. Kang, H. Qiao, Xinzhuo Tu, Teng Li, Zhiguang Fu, Yingjie Wang 2026-03-01 Current Issues in Molecular Biology 0 5
visibility_off Eco-Evolutionary Dynamics of Proliferation Heterogeneity: A Phenotype-Structured Model for Tumor Growth and Treatment Response Lara Schmalenstroer, Russell C. Rockne, Farnoush Farahpour 2026-03-17 bioRxiv 0 10
visibility_off Spatial tumor evolution panorama of ovarian cancer Chenzhao Feng, Yunyi Yang, Guanchun Li, Zixuan Fang, Bin Yang, Fang Zhao, Xingyu Chen, Shuying Liu, Di Wu, Xingyuan Hu, Jingjing Yin, Siyang Zhang, Junpeng Fan, Wenju Peng, Zhe Hu, Zimeng Wu, Yu Fu, Funian Lu, T. Qin, Beibei Wang, Gordon B Mills, Xin Zhou, Jing Li, Tao Zhu, Peng Fei, Peng Wang, Ding Ma, Fuxia Li, Gang Chen, Chaoyang Sun 2026-03-01 Cell Reports Medicine 0 19
visibility_off Xenium-based spatial transcriptomic analyses uncover prognosis-associated heterogeneity in the tumor microenvironment (TME) of angioimmunoblastic T-cell lymphoma (AITL). Jiyan Dong, Xiaoyue Xiao, Lin Nong, Xuemin Xue, Long Wang, Xujie Sun, Kang Jiang, Xiaoli Feng 2026-02-19 The Journal of pathology 0 9
visibility_off High-Resolution Spatial Multi-Omics Enables Prognostic Scoring in Intrahepatic Cholangiocarcinoma. Yuzhi Jin, Jie Mei, Jinlin Cheng, Qiqi Liu, Libing Hong, Liaoliao Gao, Li Xie, Xuqi Sun, Yuhao Tang, Shan Xin, Yi Shi, Xiaomeng Dai, Z. Tong, Haibo Zhang, W. Fu, Jinzhang Chen, Jian Ruan, Weijia Fang, Jingping Yun, Haowen Deng, Wei Wei, Bo Lin, P. Zhao, X. Bao 2026-02-01 Molecular therapy : the journal of the American Society of Gene Therapy 0 14
visibility_off The Evolution of Spatial Omics Technologies Introduces A Novel Avenue for Lung Cancer Research. Yue He, Zifan Li, Wenxiang Wang, Xu Liu, Shanshan Lu, Jing Bai, Lin Weng, Qingna Zhang, Jun Wang, Kezhong Chen 2026-01-30 Genomics, proteomics & bioinformatics 0 9
visibility_off A hierarchical Bayesian framework for inferring mitochondrial clonal selection from single-cell data. Qianqian Song, Xiaobo Zhou, Aoqi Wang, Yanfei Wang, Xiaona Liu, Qing Wang, Sen Guo, Jianguo Wen 2026-02-12 Research square 0 10
visibility_off MapMyCells: High-performance mapping of unlabeled cell-by-gene data to reference brain taxonomies S. Daniel, Changkyu Lee, Tyler Mollenkopf, Matthew Lee, J. Arbuckle, Elysha Fiabane, M. Gabitto, Nelson Johansen, Inkar Kapen, Andrew W. Kraft, Jane C. C. Lai, S. Li, R. McGinty, Jeremy A. Miller, Skyler Welch-Moosman, Sven Otto, Lane Sawyer, N. Shepard, C. Thompson, Andreas Tjärnberg, J. Waters, Xingjian Zhen, Evan Z. Macosko, E. Lein, Lydia Ng, Hongkui Zeng, S. Mufti, Zizhen Yao, Mike Hawrylycz 2026-03-09 bioRxiv 1 79
visibility_off Meningioma microenvironment harbors a rich immune landscape that evolves with biological state. Xiaopeng Guo, Zachary A Moynihan, Joseph Driver, Ruchit V. Patel, Varun Bhave, Eduardo A Maury, Erik H. Knelson, Hong Guo, Jia-Ren Lin, Shannon M Coy, Anthony Z. Wang, Saksham Gupta, Samantha E Hoffman, Ian F. Dunn, Gavin P. Dunn, Allegra Petti, Bryan D. Choi, A. Choudhury, D. Raleigh, Kevin Wei, D. Reardon, D. Barbie, James A. Lederer, Sandro Santagata, W. L. Bi 2026-02-02 Neuro-oncology 0 46
visibility_off Metabolic dependencies and neural progenitor dysregulation: driving forces in paediatric high-grade glioma development Yan Hay Grace Lee, M. Tsoli, Yan-Chuan Shi, Chi Kin Ip, D. Ziegler 2026-03-13 Cancer Metastasis Reviews 0 24
visibility_off Epigenetic state inheritance drivers drug-tolerant persister-induced resistance in solid tumors: A stochastic agent-based model Xiyin Liang, J. Lei 2026-01-30 ArXiv 0 12
visibility_off MIF-CD74 signaling drives immune modulation in medulloblastoma. Benjamin Draper, Zhen You, Dean Thompson, Xu Guo, A. Morcavallo, Diego Chillon Pino, Carlos Lorenzo Gido Nery, Sumana Shrestha, Chantelle Bowers, Courtney Himsworth, A. Delaidelli, Bethany Remeniuk, Sonia Morlando, Brandon Wade, Freya Gordon, Yara Sanchez-Corrales, Bei Hopkins, Natalie Monteiro, D. Locke, Miao Liu, Jacob Torrejon Diaz, Kevin Greenslade, Barbara Martins Da Costa, Karen Barker, C. Kwok, O. Ogunbiyi, A. Fletcher, Stacey Richardson, Carlos Custódia, R. Roque, Thomas Jackson, Regan Barfoot, Sergi Castellano, R. Hill, Olivier Saulnier, Thomas S. Jacques, Michael D. Taylor, C. C. Faria, Olivier Ayrault, P. Sorensen, John Anderson, Louis Chesler, L. F. Huang, Steven C. Clifford, Laura K. Donovan 2026-02-06 Neuro-oncology 0 20
visibility_off Beyond Resection: Surgery as an Evolutionary Bottleneck Shaping Tumor Evolution and Treatment Response in Diffuse Gliomas P. Tini, Flavio Donnini, G. Rubino, Giuseppe Battaglia, P. Pastina, Marta Vannini, T. Carfagno, G. Tiezzi, Ludovica Cellini, G. Minniti, Salvatore Chibbaro 2026-03-01 Cancers 0 25
visibility_off CX3CL1-CX3CR1 signaling orchestrates malignant progression of prostate cancer through luminal progenitor-macrophage crosstalk. Yu Jiang, Yuchen Guo, Lizhuang Han, Shiwei Wang, Fang Wang, Yongliang Zhao, Jiajia Wang, Junyan Han, Miaomiao Liu, Zhihua Liu, Qin Zhang 2026-03-23 Cellular oncology 0 6
visibility_off Integrated single-cell transcriptomic atlas of human gastric and colorectal tissues across diverse phenotypes Yunjin Go, A. Uesugi, Dakeun Lee, S. Lim 2026-03-26 Scientific Data 0 6
visibility_off Abstract PS3-06-16: Mapping neutrophil architecture with integrative spatial analysis to reveal clinically relevant functional heterogeneity Y. Xu, D. Ma, X. Wu, Z. Qiu, L. Dai, H. Zhang, S. Zhao, Y. Xiao, Y. Jiang, Z. Shao 2026-02-17 Clinical Cancer Research 0 5
visibility_off Integrated inference of cancer gene expression from cell-free plasma chromatin Gunsagar S. Gulati, D. Vasseur, Rashad Nawfal, Shahabbedin Sotudian, Karl Semaan, Marc Eid, J-H. Seo, Noa Phillips, J. Canniff, H. Savignano, Surya B. Chhetri, Zhenjie Jin, Yukun Ou, M. Bani, Gwo-Shou Mary Lee, Rachel Trowbridge, Ilana B. Epstein, Gabriella Rickards, Paulo Cordeiro, Ze Zhang, Razane El Hajj Chehade, Brad James, C. Massard, Antoine Italiano, A. Hollebecque, Jean-Charles Soria, F. André, Cécile Badoual, Joaquim Bellmunt, Harshabad Singh, Andrew J. Aguirre, B. Wolpin, T. Choueiri, S. C. Baca, M. Freedman 2026-02-19 bioRxiv 0 22
visibility_off Single‐Cell Sequencing Reveals the Immunosuppressive Trajectory in the Tumor Microenvironment of Human Giant Cell Tumor of Bone Yiming Liu, Wei Luo, Yude Xu, Xiguan Yao, Libing Dai, Q. Feng, Peigeng Wang, Weichao Yang, Yi Feng, Haixiong Miao, Suixiang Huang, Dongping Ye 2026-01-01 BioMed Research International 0 7
visibility_off Monitoring glioblastoma extracellular vesicle evolution using a nanodiagnostic platform to detect glioma stem cells driving recurrent disease Zhen Zhang, R. Lobb, P. Tooney, Jing Wang, R. Lane, Quan Zhou, Xueming Niu, S. Faulkner, O. Al-iedani, B. Day, S. Puttick, S. Rose, M. Fay, M. Trau 2026-01-30 Science Advances 1 18
visibility_off MultiSP deciphers tissue structure and multicellular communication from spatial multi-omics data. Chenfeng Mo, Xiufen Zou, Suoqin Jin 2026-02-01 Cell genomics 0 18
visibility_off Epithelial plasticity shapes intratumoral heterogeneity and cell lineages in early-stage lung cancer. Yangjie Xiong, Xiaofang Wang, K. Yan, N. Xin, Wei-qing Li, Zhengwei Zhang, Yumei Cheng, Chunling Zeng, Yuxiang Luo, Xiaoxiao Liu, Xiaojing Lu, Xinhui Yan, Haoqi Lan, Tanwen Wu, Yue Dong, Xu Lin, Ying Li, X. Jia, Simin Wang, Hua Tang, Yuexiang Wang 2026-03-06 Science advances 0 12
visibility_off Single-cell spatial atlas of high-grade serous ovarian cancer uncovers MHC class II as a key predictor of spatial tumor ecosystems and clinical outcomes. Fernando Pérez-Villatoro, Aleksandra Shabanova, Lilian van Wagensveld, Ada Junquera, Iga Niemiec, María Hincapié-Otero, Ziqi Kang, Matias M. Falco, Kürşat Birgin, Sarah Wolf, Ella Anttila, Gayani Anandagoda, J. Casado, Eric Marcus, Duco H K Gaillard, E. Kahelin, Foteini Chamchougia, M. Salko, Saundarya Shah, Salvatore Russo, Jacopo Chiaro, M. Grönholm, Joseph Ndika, Otto K. Kari, iCAN iCAN, G. Sonke, K. K. van de Vijver, Rutgerus Fpm Kruitwagen, M. A. van der Aa, A. Virtanen, V. Cerullo, Anna Vähärautio, P. Sorger, H. Horlings, Anniina Farkkila 2026-02-09 Cancer discovery 0 38
visibility_off OncoBERT: Context-Aware Modeling of Somatic Mutations for Precision Oncology Sushant Patkar, Noam Auslander, Stephanie A. Harmon, P. Choyke, B. Turkbey 2026-02-19 bioRxiv 0 90
visibility_off Astrocyte–Glioblastoma Stem Cell Interactions via Extracellular Vesicles Contribute to Distinct Vascular Structures Yusuke Shirai, Masumi Tsuda, Lei Wang, Yoshitaka Oda, Hirokazu Sugizno, Zen-ichi Tanei, J. Gong, Shinya Tanaka 2026-02-01 Pathology International 0 14
visibility_off PRDM1 Drives Chemoradiotherapy-associated Enrichment of Adaptive NK Cells in Cervical Cancer Meng Wan, Tang Zhong, Wenyang Shi, Jianyu Shen, Wei Zhang, Yizhe Sun 2026-02-01 bioRxiv 0 3
visibility_off Deep learning enables quantitative subcellular analysis of plant-microbe interfaces Stavros Korovesis, Shumei Wang, Lin Xu, Inès Giraudon, Daniela Rosales Hernandez, Enora Panek, Laure Boeglin, Maria-Myrto Kostareli, M. Pluis, Baoyu Wang, Yuan Wang, Djenatte Abdennour, Harald Keller, Paul R. J. Birch, S. Schornack, E. Evangelisti 2026-02-08 bioRxiv 0 44
visibility_off Dissecting glioblastoma risk signatures in the tumor immune microenvironment based on multi-dimensional transcriptomics Tengyue Li, Wanqi Mi, Huarui Yan, Yining Ma, Han Jiang, Xiaoxu Yang, Yunpeng Zhang, Congxue Hu 2026-03-25 GigaScience 0 19
visibility_off 4D Single-Cell Spatial Transcriptomics Reveals Dynamic Morphogenetic Gradients and Regenerative Domains in Planarians Kai Han, Yue-Lei Chen, Yao Li, Lidong Guo, Yuxiao Wang, Xiawei Liu, Yaru Lin, Zhi Huang, Qun Liu, Wenjie Guo, Rui Zhang, Wandong Zhao, Langchao Liang, Xiaoyu Wei, Li Zhou, Xuebin Mao, Jiaqi Wang, Weijian Wu, Hongwei Pan, Tao Yang, He Zhang, Xiaoshan Su, Shanshan Liu, Wenwei Zhang, Longqi Liu, S. T. Christensen, Jifeng Fei, Xin Liu, Guangyi Fan, Hanbo Li, Ying Gu, Jian Wang, Huanming Yang, Gang Pei, Xun Xu, An Zeng, Mengyang Xu 2026-02-19 bioRxiv 0 33
visibility_off A Comparison of Mechanisms Driving Lesion Outcomes during Lung Tumor and Tuberculosis Granuloma Formation Christian T. Michael, M. Budak, Denise E. Kirschner 2026-02-27 bioRxiv 0 6
visibility_off CellSwarm: LLM-Driven Cell Agents Recapitulate Tumor Microenvironment Dynamics and Sense Indirect Genetic Perturbations Xuanlin Meng, Tengjiao Wang, Zhongyuan Dong, Xinhao Li, Xiuliang Cui, Lianghua Wang 2026-02-26 bioRxiv 0 9
visibility_off LINE-1 Transcript Heterogeneity in Non-Small Cell Lung Cancers Is Driven by Host Genomic Context and Conserved Functional Hotspots Yingshan Wang, Kenneth S. Ramos 2026-01-30 Cancers 0 3
visibility_off Challenges and advances in drug resistance and tolerance in cancer T. Bivona, Itai Yanai, Fabio Calabrò, F. Mechta‐Grigoriou, G. Corleone, Marta Di Martile, A. Tocci, Piera Tocci, S. Vaccarella, Marilia Ferriero, A. Alimonti, E. Ruppin, P. Nisticò, A. Bagnato, G. Blandino 2026-03-04 Journal of Experimental & Clinical Cancer Research 0 64
visibility_off A spatial multi-omic portrait of survival outcome for clear cell renal cell carcinoma L. Meyer, S. Engler, M. Lutz, P. Schraml, D. Rutishauser, A. Bertolini, M. Lienhard, C. Beisel, F. Singer, N. De Souza, N. Beerenwinkel, H. Moch, B. Bodenmiller 2026-03-04 None 0 66
visibility_off Cancer in 4D: toward Spatiotemporal Hallmark Ecosystems. Mustafa Sibai, Martin Zacharias, N. Mcgranahan, M. Jamal-Hanjani, Eduard Porta-Pardo 2026-03-01 Trends in cancer 0 75
visibility_off Interclonal cooperation and suppression shape early Ras-driven tumour growth José Teles-Reis, Caroline Dillard, M. Antunes, Ashish Jain, Paula Ruiz-Duran, Minghua Deng, Dan Liu, C. Gaudin, S. Nakken, Amrinder Singh, Michael E Baumgartner, Anna M. Dahlström, V. Reinertsen, T. Rusten 2026-02-20 bioRxiv 0 38
visibility_off Abstract B055: Single-cell meta-analysis reveals a neural-progenitor to mesenchymal transition driving immune evasion and resistance in glioblastoma Randa Elzein, Safa Elzein 2026-03-23 Cancer Research 0 0
visibility_off evoCancerGPT: Generating Zero-Shot Single-Cell and Single-Sample Cancer Progression Through Transfer Learning Xi Wang, Runzi Tan, Simona Cristea 2026-02-13 bioRxiv 0 1
visibility_off CCL3 is produced by aged neutrophils across cancers and promotes tumor growth. Evangelia Bolli, P. Wirapati, Mehdi Hicham, Yuxuan Xie, Marie Siwicki, Florent Duval, A. Goubet, Máté Kiss, Béatrice Zitti, Thomas Zwahlen, Sheri Mcdowell, Ruben Bill, Simona Angerani, Camilla Engblom, Seth Anderson, Aiping Jiang, Oliver Hartley, David B. Sykes, Maja Jankovic, Nadine Fournier, Matthias Gunzer, D. Tarussio, S. Tissot, P. Sadow, William C. Faquin, Moshe Sade-Feldman, Ralph Weissleder, Sara Pai, François E. Mercier, R. Manguso, Mikael J. Pittet 2026-02-01 Cancer cell 2 31
visibility_off Distinct tumor immune microenvironmental (TIME) landscapes drive divergent immunotherapy responses in glioblastoma. Linqian Weng, Krish Skandha Gopalan, Mélanie Guyot, M. Vanmechelen, P. Nazari, M. Duhamel, Clelia Donisi, Carla Pallarés-Moratalla, A. Garg, K. White, A.T. Byrne, D. Lambrechts, F. De Smet, G. Bergers 2026-01-31 Neuro-oncology 0 17
visibility_off The interplay of clonal hematopoiesis and cancer: Clinical implications in oncology. M. Tanguay, M. Tagliamento, J. Samaniego, B. Besse, A. Renneville, E. Bernard, J. Micol 2026-02-01 Cancer treatment reviews 0 11
visibility_off Precision Immunotherapeutics for Glioblastoma: Current Approaches and Emerging Strategies in 2026 J. Poe, Claire Kim, C. Coleman, Hieu Nguyen, Vaithish Velazhahan, Brandon H. Bergsneider, Vivek Sanker, Samuel H. Kim, Yijiang Chen, M. Abikenari, John Choi, Michael Lim 2026-03-01 Cells 0 7
visibility_off Abstract PS2-11-29: Deciphering the tumor microenvironment related to immune regulation in triple-negative breast cancer Y. Cha, S. Bae, J. Kim, K. Kim, Y. Kook, A. Kim, S. Ahn, J. Jeon 2026-02-17 Clinical Cancer Research 0 3
visibility_off High-Fidelity Long-term Whole-embryo Lineage and Fate Reconstruction by Iterative Tracking with Error Correction Mengfan Wang, Qinghua Zhang, Congchao Wang, Yunfeng Chi, Wei Zheng, Zeyu Mu, Xiangyu Cao, Weizhan Zhang, Boao Yang, Alexander F. Schier, J. N. Acedo, Yinan Wan, Guoqiang Yu 2026-03-16 bioRxiv 0 6
visibility_off Advances in spatial omics for the analysis of prostate cancer. Junyi Xu, Dejiang Wang, Xiangjun Di, Yang Liu 2026-02-21 Analytical and bioanalytical chemistry 0 17
visibility_off SenCat: Cataloging human cell senescence through multiomic profiling of multiple senescent primary cell types C. Anerillas, Gisela Altés, Katarína Grešová, Dimitrios Tsitsipatis, K. Mazan-Mamczarz, R. Banarjee, A. S. Cunningham, Martin Salamini-Montemurri, Jen-Hao Yang, R. Munk, Martina Rossi, Yulan Piao, B. Olinger, Quinn Strassheim, J. Martindale, Jinshui Fan, Chang-Yi Cui, Supriyo De, Delaney V Rutherford, Yinghong Hao, Ziyi Li, Jessica Roberts, Y. A. Qi, K. Abdelmohsen, Rafael de Cabo, Allison B. Herman, Manolis Maragkakis, N. Basisty, Myriam Gorospe 2026-02-07 bioRxiv 0 71
visibility_off Integrative analyses of metastatic cancer transcriptome reveal clinically distinct cellular States and ecosystems Can Zhang, Si Li, Yun Yu, Meng Chi, Ziming Yuan, Kunyu Wang 2026-02-05 Scientific Reports 0 9
visibility_off Abstract PS3-12-15: Mapping the imprint of taxane chemotherapy on the metastatic microenvironment in HR+ breast cancer with single cell and spatial profiling R. Strasser, Y. Tam, R. M. Oscanoa, Å. Segerstolpe, J. Nelson, C. McCann, L. Dellostritto, A. Frangieh, K. Helvie, S. Vigneau, A. Thorner, K. Nguyen, S. Strauß, N. Lin, S. Tolaney, S. Farhi, B. E. Johnson, N. Wagle, J. Klughammer, D. Abravanel 2026-02-17 Clinical Cancer Research 0 47
visibility_off eScreen: a deep learning framework for functionally decoding the regulatory genome at single-nucleotide resolution Shijie Luo, Liquan Lin, Han Zhang, Yiding Yang, Yunxiang Liu, Yingli Han, Fei Chen, Ruipu Liang, Ximing Nian, Jinxian Dai, Runsheng Chen, Hongli Lin, Zhijie Li, Yongying Peng, Teng Fei, Jialiang Huang 2026-02-05 bioRxiv 0 5
visibility_off Integrating Spatial Proteogenomics in Cancer Research. Yida Wang, Yang Wu, Feng Zhang, Parthiban Periasamy, Haiyue You, Denise Goh, R. E. Fincham, Xin Ning, Danping Wu, Lu Liu, Ying Jiang, Zhiwen Qian, Joe Yeong, Yan Zhang 2026-02-08 Advanced science 0 9
visibility_off SRS37 - Myeloid-GSC interactions at the invasive edge of live human glioblastoma Alsadeg Bilal, P. Brennan 2026-03-01 British Journal of Surgery 0 1
visibility_off Nested ecosystems theory for conceptualizing brain tumors. Lori A Forster, David H. Gutmann 2026-02-01 Disease models & mechanisms 0 9
visibility_off Spatial heterogeneity of antibody–drug conjugate targets in pancreatic ductal adenocarcinoma Deema Sabtan, M. Eich, Florian N. Loch, Julen Karl Pérez Zuschneid, M. Möbs, Judith Böhme, Frederick Klauschen, D. Horst, M. Dragomir, G. Dernbach, S. Schallenberg 2026-03-01 The Journal of Pathology: Clinical Research 0 18
visibility_off A translational colorectal cancer organoid biobank mirrors patients' tumor histology, molecular profiles, and treatment responses. M. Jesinghaus, M. G. Silva, A. Zaurito, Valentina Brunner, Frederic Saab, A. Rajamani, N. de Andrade Krätzig, Nicholas Bodenstein, Rémi Guillemant, J. Pohl, Maxime Schmitt, R. Öllinger, Federico Fusco, J. Shakhtour, P. Klare, K. Janssen, S. Foersch, Katja Steiger, Roland Rad, N. Pfarr, Dieter Saur, Markus Tschurtschenthaler 2026-02-25 Journal of experimental & clinical cancer research : CR 0 28
visibility_off Unraveling CD4+ T cell heterogeneity and cell death-associated genes in high-grade serous ovarian cancer: a comprehensive analysis of single-cell RNA and spatial transcriptome sequencing. Shaobo Wu, Chun-feng Wu, Jiayin Yu, Yaoyao Li, Yanhong Lv, Lei Ding, Dianshun Zhang, Yurou Zhou, Jun Tang 2026-02-24 Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico 0 4
visibility_off Regenerative base editing enables deep lineage recording Duncan M. Chadly, Ron Hadas, Leslie Klock, Jiahe Yue, Felix Horns, Amjad Askary, Alejandro A. Granados, R. Bouckaert, Carlos Lois, Long Cai, M. Elowitz 2026-02-07 bioRxiv 0 66
visibility_off A blueprint for local and distal invasion programs in glioblastoma. Rony Chanoch-Myers, Toshiro Hara, Alissa C. Greenwald, Rouven Hoefflin, L. Bussema, Hannah R. Weisman, Edwin Nieblas-Bedolla, Jahnavi Gurramkonda, Zhibek Bekezhankyzy, Alexander Jucht, Ester Calvo Fernández, A. Spitzer, Jeremy Man Fung, Biella Chiara, W. Al-Holou, S. Camelo-Piragua, Jinan Behnan, Rossella Galli, Hiroaki Wakimoto, M. Suva, I. Tirosh 2026-03-17 Nature communications 0 24
visibility_off Artificial Intelligence–Enabled Dissection of Regulatory T Cellsin the Tumor Immune Microenvironment:From Mechanistic Insight to Population-Scale Inference Xuexue Hao, Muwei Li, Tao Xiong, Xiaoqiang Liu 2026-02-08 Life Conflux 0 4
visibility_off Cross-species graph-embedding unmasks the ageing microenvironment as a key determinant of pancreatic cancer malignant cell biology and therapy response J. Henríquez, Muntadher Jihad, A. Jassim, Eloise G Lloyd, Weike Luo, Judhell S Manansala, Sneha Harish, Sara Pinto Teles, P. Cheng, G. Mucciolo, Wenlong Li, Marta Zaccaria, Debasmita Mukherjee, Rebecca Brais, Sally Mills, Paul M Johnson, Mireia Vallespinos, Richard J. Gilbertson, Giulia Biffi 2026-02-03 bioRxiv 0 5
visibility_off Analysis of Transcriptograms in Epithelial-Mesenchymal Transition (EMT) Odilon Júlio dos Santos, Rodrigo Juliani Siqueira Dalmolin, Rita M. C. de Almeida 2026-02-18 bioRxiv 0 3
visibility_off Stochasticity in cancer immunotherapy stems from rare but functionally critical Spark T cells. Emanuel Salazar-Cavazos, D. Jia, Y. Missolo-Koussou, Adam L. Kenet, Sooraj R. Achar, Hannah Dada, Taisuke Kondo, A. Krishnan, N. Taylor, Nicholas D. Klemen, Peng Jiang, J. Waterfall, Don L DeVoe, Grégoire Altan-Bonnet 2026-02-01 Cell 0 28
visibility_off Mammosphere Assay Reveals Api5-Induced Stemness in Non-Tumorigenic Breast Epithelial Cell Lines. S. Bhatia, M. Lahiri 2026-02-24 Journal of visualized experiments : JoVE 0 17
visibility_off Comprehensive detection of genetic and epigenetic alterations in cancer using long reads with TumorLens L. F. Paulin, M. Shi, Y. Fu, X. Zheng, G. Au-Yeung, D. Bowtell, J. Chen, Y. Liang, C. Hammer, F. Sedlazeck 2026-03-19 medRxiv 0 34
visibility_off Transcriptomic evaluation of immune-infiltrated patient-derived tumor organoids as preclinical models in renal cell carcinoma Liangwei Yin, Léonard Lugand, Jules Russick, J. LeMaoult, C. Battail 2026-02-01 bioRxiv 0 45
visibility_off Integrating Transcriptomics and 3D Spheroid Models Reveals Microenvironment-Dependent Purinergic Modulation in Hepatocellular Carcinoma Arieli Cruz de Sousa, Augusto Ferreira Weber, V. Klain, J. Scholl, J. O. Ramos, Natália Baltazar do Nascimento, Maria Luiza Giehl, Renata Kruger Martins, João Vitor Heres, C. K. Dias, Renata Marschner, F. Figueiró, F. Guma 2026-02-25 Metabolites 0 12
visibility_off Heterogenous Model of Temozolomide Resistance in Glioblastoma Reveals Phenotypic Shifts in Drug Response and Migratory Potential Victoria A. Kriuchkovskaia, Ela K. Eames, Sydney A. McKee, P. Hergenrother, Rebecca B. Riggins, Brendan A. C. Harley 2026-02-24 Advanced NanoBiomed Research 0 56
visibility_off Abstract B035: Integrating RNA sequencing and spatial transcriptomic analyses reveals drivers of glioblastoma malignancy near the brains’ lateral ventricles Maria F. Gonzalez-Aponte, Jhan C. Salazar, Aura Figueroa-Gonzalez, E. Norton, Paola Suarez-Meade, Hugo Guerrero-Cázares 2026-03-23 Cancer Research 0 10
visibility_off Reconstruction of T cell infiltration in an osteosarcoma PDX-organoid interactive biobank for personalized immunotherapy Wei Sun, Yining Tao, Xin He, Qi Zhang, Xiyu Yang, Haoru Dong, Haoyu Wang, Weixi Chen, Bing Yao, Liyuan Zhang, W. Mao, Mingxi Li, Yuqin Yang, Zhengdong Cai, Jinzeng Wang, Haoran Mu, Liu Yang, Yingqi Hua 2026-02-01 Cell Reports Medicine 0 5
visibility_off A disease model resource reveals core principles of tissue-specific cancer evolution. S. Mueller, N. de Andrade Krätzig, Markus Tschurtschenthaler, M. G. Silva, Chiara Thordsen, Riccardo Trozzo, P. Simon, Frederic Saab, Thorsten Kaltenbacher, M. Zukowska, Daniele Lucarelli, R. Öllinger, Joscha Griger, Nina Gross, Tanja Groll, Jessica Löprich, A. Zaurito, Linus R. Schömig, J. Bugter, S. Bärthel, C. Falcomatà, Alexander J. Strong, Cordelia Brandt, Mulham Najajreh, A. Papargyriou, Roman Maresch, Katharina A. N. Collins, D. Sailer, C. Schneeweis, S. Burger, L. M. Fröhlich, Christine Klement, A.Y. Belka, Juan J. Montero, U. Jungwirth, Maximilian Reichert, Markus Moser, Jens Neumann, G. Vassiliou, J. Cadiñanos, Ignacio Varela, Carsten Marr, D. Alonso, Pier-Luigi Lollini, Jean J. Zhao, L. Chesler, C. Isacke, Angela Riedel, Christian J. Braun, M. Sos, F. Beleggia, H. Reinhardt, M. Musteanu, Mariano Barbacid, Michael Quante, M. Schmidt-Supprian, Günter Schneider, Simon Clare, Trevor D. Lawley, Gordon Dougan, Katja Steiger, Nathalie Conte, Allan Bradley, Lena Rad, Dieter Saur, Roland Rad 2026-02-25 Nature 0 56
visibility_off Abstract C025: Effect of Chemotherapy on Spatial Relationships in the Colorectal Cancer Immune Microenvironment Cheryl H. Chang, N. DeVito, Kylee Li, Chanjuan Shi, J. Hickey, Reuben R. Cano, Jatin Roper, M. Lidsky 2026-02-18 Cancer Immunology Research 0 4
visibility_off Glioblastoma cell plasticity: A new paradigm in glioblastoma therapeutic resistance. T. Xiao, Zhiling Wei, Minghua Wua 2026-02-13 Biochimica et biophysica acta. Reviews on cancer 0 3
visibility_off Mathematical dissection of tumor phenotypic heterogeneity in a spatial data-informed nonlocal reaction-diffusion model. Fang-Ge Li, Hui Li, Lin Lin, Xiaoqiang Sun 2026-03-22 Journal of mathematical biology 0 4
visibility_off In vivo imaging of metabolic heterogeneity across three endpoints relevant to aggressive breast cancer Victoria W. D’Agostino, Michelle Kwan, Adelle Yong, Kira Grossman, Enakshi D Sunassee, Megan C. Madonna, M. Hirschey, Gregory M Palmer, Nimmi Ramanujam 2026-02-10 PNAS Nexus 0 9
visibility_off Tumor microenvironment transcriptional activity enables robust stratification of chemotherapy response in triple-negative breast cancer. Yaoyi Dai, X. Pan, Shuai Guo, Shuangxi Ji, S. Cao, Matthew D. Montierth, Yujie Jiang, Jeffrey T. Chang, Leming Shi, Shabnam Shalapour, Gloria V Echeverria, Lucy Yates, Johan Staaf, B. Lim, Yinyin Yuan, Wenyi Wang 2026-02-01 Cell reports. Medicine 0 40
visibility_off Metabolic permissiveness: how tissue context shapes cancer. Chrysanthi Moschandrea, C. Frezza 2026-02-09 Genes & development 0 11
visibility_off Reprogramming the tumor immune microenvironment in cervical cancer: synergy between radiotherapy and immunotherapy Zhenyu Wang, Zikang Wang, Jiyue Jiang, Lu Yang, Chunxiao Li, Xiu-fen Deng, Yu Li, Jiao Yuan, Ping Jiang, Junjie Wang 2026-02-17 Molecular Cancer 0 12
visibility_off Abstract B002: The dual nature of glioblastoma cell motility: Migratory efficiency as a prognostic determinant M. Morelli, G. Ferri, F. Di Lorenzo, Francesca Marchetto, F. Lessi, S. Franceschi, T. Hohmann, F. Pieri, C. Gambacciani, F. Pasqualetti, Y. Shah, Jace Singh, Bruce J. West, M. Menicagli, M. Giacomarra, Lucio Tonello, O. Santonocito, A. Pastore, P. Aretini, A. D. Di Stefano, P. Grigolini, L. Palatella, C. Mazzanti 2026-03-23 Cancer Research 0 20
visibility_off A Predictive Immunological Signature Associated with Pathological Response in Breast Cancer Treated with Neoadjuvant Chemotherapy L. Palafox-Mariscal, M. García-Chagollán, Jesús García-Gómez, Fabiola L. Martín-Amaya-Barajas, Valeria Peña-Ruiz, Elizabeth Alvarez-Gonzalez, E. Aranda-Zuno, Jonathan Gallegos-Diaz-de-Leon, A. Alcaraz-Wong, K. Ordóñez-Pantoja, Raquel Villegas-Pacheco, A. Aguilar-Lemarroy, L. Jave-Suárez 2026-03-01 Biomedicines 0 31
visibility_off TRIM9 switches the morphological phenotype of melanoma cells Kimberly Lukasik, Aneri Shah, Chris T. Ho, Matthew X. Li, G. Patrick, Jordan Brooks, S. Rothenfusser, James E. Bear, Stephanie L. Gupton 2026-03-18 bioRxiv 0 5
visibility_off Cancer Driver Gene Discovery: A Patient-Level Statistical Framework Farideh Bahari, Hesam Montazeri 2026-02-18 bioRxiv 0 8
visibility_off DemuxHMM: Large-Scale Single-Cell Embryo Profiling via Recombination Barcoding A. Afanassiev, K. Wei, Nozomu Yachie, K. Sugioka, G. Schiebinger 2026-02-24 bioRxiv 0 26
visibility_off A phenotype-based cell culture model of melanoma cells that persist as residual disease after therapies leading to recurrence Balraj Singh, V. Sarli, N. Erry, Anthony Lucci 2026-02-18 Research Square 0 8
visibility_off A biologically constrained agent-based model of cancer stem cell dynamics with reinforcement learning-guided adaptive radiotherapy Mina Lagzian, S. E. Razavi, R. K. Moghaddam 2026-02-05 PLOS One 0 3
visibility_off Single-cell multi-omic techniques highlight the diverse composition and intercellular interactions of the vestibular schwannoma tumor microenvironment. Shree S Pari, Sangami Pugazenthi, A. Kim, B. Patel 2026-03-01 Neuro-oncology advances 0 13
visibility_off Reconstruction of epithelial transcriptional trajectories reveals heterogeneous progression and early therapy-resistance programs in high-grade serous carcinoma precursors Michail Sideris, E. Maniati, Tanjina Kader, S. Santagata, Ronny Drapkin, Frances R. Balkwill, R. Manchanda 2026-02-09 bioRxiv 0 22
visibility_off The intratumoral microbiome in colorectal cancer: origins, microenvironmental interactions, and new horizons in precision medicine Xuemei Li, Qian Wang, Qian Yuan, Li Wang 2026-02-27 Frontiers in Immunology 0 4
visibility_off Association of Circulating T Cell and Tumor Microenvironment Profiles with Immune Checkpoint Blockade Outcome in Sarcoma. E. Rosenbaum, Fiona D. Ehrich, M. Yosofvand, M. Bradic, Jasme Lee, Mathew Adamow, S. Movva, C. Kelly, V. Avutu, Lauren B Banks, J. Chan, P. Chi, M. Dickson, M. Gounder, M. Keohan, Robert G. Maki, Damon R. Reed, Paige Fuentes, Paige Collins, R. Desir, Allison Reiner, O. Baranov, Konstantin Chernyshov, N. Kotlov, A. Subramanian, E. Moding, L. Qin, Phillip Wong, W. Tap, C. Antonescu, K. Panageas, Ronglai Shen, S. D’Angelo 2026-02-12 Clinical cancer research : an official journal of the American Association for Cancer Research 0 139
visibility_off DeCAF defines clinical fibroblast subtypes and multidimensional tumor-stroma crosstalk shaping prognosis and immunotherapy response. X. Peng, Ian C McCabe, Elena V Kharitonova, Yi Xu, Ryan T Zhao, C. Luan, Joseph F Kearney, Nancy P. Kren, Arthi Hariharan, Jaewon J Lee, J. Su, Priscilla S Chan, Ashley B Morrison, Michelle E. LaBella, Silvia G. Herera Loeza, Ashley Cliff, Hong Jin Kim, Y. Pylayeva-Gupta, Susan Tsai, B. Belt, R. Panni, David Linehan, Shawn M. Gomez, Jeffrey S. Damrauer, Alina C Iuga, William Y. Kim, Naim U Rashid, J. J. Yeh 2026-02-01 Cell reports. Medicine 0 25
visibility_off Persistent spatial immune responses in glioblastoma following oncolytic virus therapy. Wenxue Ma, Teresa Sposito, Kendale Wirtjes, Catriona Jamieson 2026-02-01 Cytokine & growth factor reviews 0 12
visibility_off Integrated multi-omics analysis reveals that MARCKS reprograms the immunosuppressive microenvironment to drive hepatocellular carcinoma progression. Haifei Qin, Q. Lu, Baicheng Hu, Xin Zhou, Chenlu Lan, Honglong Lu, D. Gao, Chongjiu Qin, Kai Peng, Yongguang Wei, Xiwen Liao, Tao Peng, Liming Shang, Guangzhi Zhu 2026-03-11 NPJ precision oncology 0 24
visibility_off Single-cell mapping of cholesterol metabolism reveals FDPS as a therapeutic vulnerability in hepatocellular carcinoma Xupeng Yang, Jiajun Li, Yurong Wang, Qiang Gao, Mao Zhang 2026-02-18 Cellular Oncology 0 9
visibility_off Molecular heterogeneity of Glioblastoma-associated microglia and macrophages and myeloid-derived suppressor cells: Insights from single-cell omics and therapeutic implications. Saurav Kumar, Sandeepkumar Sriramanujam, Tae Gyu Oh, P. Balasubramanian, Dinesh Thotala, S. Muthukrishnan 2026-02-01 Critical reviews in oncology/hematology 0 10
visibility_off Extrachromosomal DNA Detection and Ultrastructural Profiling in Lung and Colorectal Cancer Models Astari Dwiranti, Gina Zulfa Nabila, Tiara Aulia Zalyanti, Shadira Anindieta Irdianto, A. Bowolaksono 2026-03-01 Genes 0 13
visibility_off Spatial transcriptomics reveals a key role of fibroblast-like vascular smooth muscle cells in human atherosclerotic cell crosstalk and stability. Isabel Gonçalves, Mengyu Pan, Pratibha Singh, Wenqi Wang, Jing Zhao, L. Dib, L. Sundius, A. Persson, C. Gialeli, P. Fountas, M. Nitulescu, Jan Nilsson, Stephen G Malin, Claudia Monaco, Helle F Jørgensen, Jiangming Sun, A. Edsfeldt 2026-02-13 European heart journal 0 26
visibility_off Detecting Extrachromosomal DNA from Routine Histopathology Muhammad Anwaar Khalid, Michael Gratius, Christopher Brown, Raneen Younis, Zahra Ahmadi, Lukas Chavez 2026-03-02 bioRxiv 0 5
visibility_off Progenitor Types in the Human Cortex in Normal Development and Glioblastoma. A. Martija, A. Bhaduri 2026-02-27 Annual review of neuroscience 0 38
visibility_off Progress in Single-Cell RNA Sequencing Data Analysis and Its Applications in the Study of Tumor Heterogeneity Qingsong Cai 2026-02-04 Exploring Science Academic Conference Series 0 16
visibility_off Molecular Targets for Cancer Immunotherapy: Focusing on (Immune and Tumor) Cell-Derived Metabolites Rafaella Delatorre Tavares Quintans, Ângelo Azevedo de Freitas, Maynah Melo de Souza, G. Dias-Lopes, Rafael Cardoso Maciel Costa Silva 2026-03-04 Applied Sciences 0 10
visibility_off Contrastive Alignment of Expression and Copy Number Highlights Dosage-Insensitive Genes in Cancer Garv Goswami, David Xu, Hwi Joo Park 2026-03-03 bioRxiv 0 2
visibility_off Gene duplication is associated with gene diversification and potential neofunctionalization in lung cancer evolution P. Ashford, A. Frankell, Zofia Piszka, Camilla S. M. Pang, M. Abbasian, Maise Al Bakir, M. Jamal-Hanjani, N. Mcgranahan, C. Swanton, Christine A. Orengo 2026-02-19 Genome Research 0 75
visibility_off From mono- to multi-cellular in vitro models: reconstructing colorectal cancer complexity for translational and personalized applications G. Edwards, F. S. Li Causi, Giorgio Castagnola, S. Singh, P. G. Amendola 2026-03-16 Frontiers in Cell and Developmental Biology 0 8
visibility_off Abstract B019: Mapping clonal architecture and evolution in pediatric brain cancers Minh Anh Nguyen, Pablo G. Cámara 2026-03-23 Cancer Research 0 19
visibility_off Interpreting cancer genetics through a two-step “evolutionary cascade hypothesis”: bridging neutral and selective perspectives A. Ottaiano, M. Santorsola, Francesco Sabbatino, Roberto Sirica, Francesco Caraglia, Anna Ceccarelli, V. Granata, Ines Simeone, S. Zappavigna, M. Berretta, Giovanni Savarese, Michele Caraglia 2026-02-13 Journal of Translational Medicine 0 49
visibility_off Abstract C030: LINE-1 expression imbalance is linked to immune modulation and pluripotency heterogeneity Qianhui Wan, Amy Leung, Abner Portillo, Mahek Vinod Bhandari, Joo Y. Song, Dustin E. Schones 2026-02-18 Cancer Immunology Research 0 0
visibility_off Abstract B017: From healthy brain to cancer cells: Understanding the origins of glioblastoma through the lens of Darwinian evolution J. SALAZAR SALAZAR, Sean W. McHugh, Maria F. Gonzalez-Aponte, Hugo Guerrero-Cázares 2026-03-23 Cancer Research 0 5
visibility_off Chromosomal instability and chromosome 17p loss drive convergent NDE1 synthetic lethality in metastatic cancer cells Caroline M. Teddy, Jacob P. Hoj, Julia D Caci, Min Lu, Shane T. Killarney, Tal Ben-Yishay, U. Ben-David, Kris C. Wood 2026-02-12 bioRxiv 0 17
visibility_off The construction of CD8+ T cell-associated molecular subtypes in esophageal squamous cell carcinoma reveals tumor heterogeneity, tumor microenvironment, and immunotherapy Sinan Cao, Hao Jiang, Yang Li, Ke Yang, Lili Tian, Linwei Li 2026-03-27 Frontiers in Immunology 0 12
visibility_off Decoding Glioblastoma Through Liquid Biopsy: Molecular Insights and Clinical Prospects Tomasz Wasiak, M. Jaskólska, Kamil Filiks, Jakub Bartkowiak, Adrianna Rutkowska 2026-02-01 Cells 0 6
visibility_off Intratumor Heterogeneity and Clonal Evolution in Sarcomas: Molecular, Cellular, and Functional Drivers of Therapy Resistance. T. Grünewald, Ina Oehme, J. Wagner, S. Fröhling 2026-02-01 Seminars in cancer biology 0 9
visibility_off Spatial transcriptomic map of the mouse urinary bladder. Nives Matković, A. Gelemanović, Kristijan Popović, Katarina Vilović, Caterina Oneto, D. Lazarević, Ivana Marinović Terzić, Ivana Novak, Jelena Korac-Prlic, B. Roje, Janoš Terzić 2026-03-16 Scientific reports 0 35
visibility_off Comparative Biology at Single-Cell Resolution: Rigorous Matching of Atlases for Cross-Species Analysis Marc‐Antoine Jacques, Berthold Göttgens, John C. Marioni 2026-02-19 bioRxiv 0 8
visibility_off Incremental prognostic value of immune cell densities beyond clinical parameters in non-small cell lung cancer. Love Nordling, M. Backman, Artur Mezheyeuski, Joakim Lindblad, Natasa Sladoje, Patrick Micke 2026-02-01 Lung cancer 0 16
visibility_off Detection and Characterisation of Circulating Tumour Cell Clusters in Neuroblastoma Zoe Bell, Swathi Merugu, David Jamieson, Deborah A. Tweddle, Marina Danilenko 2026-01-31 Cancers 0 4
visibility_off Abstract B032: Drug and single-cell gene expression integration identifies heterogeneity-aware synergistic combinations for glioblastoma Robert K. Suter, Anna M. Jermakowicz, Rithvik Veeramachaneni, Matthew D’Antuono, Longwei Zhang, R. Chowdary, Simon Kaeppeli, Madison Sharp, Pravallika Palwai, Vasileios Stathias, Grace Baker, Luz Ruiz, Winston Walters, Maria Cepero, Danielle M. Burgenske, Edward B Reilly, Anatol Oleksijew, Mark G. Anderson, S. Williams, Michael E. Ivan, Ricardo J Komotar, Macarena I. de la Fuente, Gregory Stein, Alexandre Wojcinski, Santosh Kesari, J. Sarkaria, Stephan C. Schürer, Nagi G. Ayad 2026-03-23 Cancer Research 0 77
visibility_off CX3CR1 identifies a potent effector CD8+ T cell subset associated with anti-PD-1 therapeutic efficacy in colorectal cancer Jiajin Ma, Yue Wu, Rongzhang Chen, Nuo Wang, Yirui Liu, Lujun Chen, Shaoxian Wu, Xiao Zheng 2026-03-18 Frontiers in Immunology 0 11
visibility_off Single-nucleus multi-omics delineates distinct epigenetic programs associated with tumor progression in lung adenocarcinoma. Yeji Kim, Huiram Kang, Y. Hwang, Kyung Soo Kim, S. Moon, Jeonghan Kim, Seung Joon Kim, Hae-Ock Lee 2026-02-11 Clinical epigenetics 0 8
visibility_off A tumor-associated photoreceptor signature unifies distinct central nervous system malignancies. B. Gudenas, S. Ahmad, B. Englinger, Anthony P Y Liu, Miao-yun Zhao, Leena Paul, Jennifer L. Hadley, Yiran Li, Melissa Batts, Priya Mittal, Stephanie C Wu, Sara A. Lewis, Katie Han, T. Soliman, Hong-Jen Lin, Laure Janke, D. Meredith, E. Pfaff, J. Gojo, J. Cotter, P. Klimo, Frederick A. Boop, Amar Gajjar, Giles W. Robinson, G. Rosén, S. Alexandrescu, David T. W. Jones, Brent A. Orr, F. Swartling, M. Filbin, P. Northcott 2026-03-01 Cancer cell 1 91
visibility_off Dynamic integrin expression, atypical nuclear localization, and spatial distribution during ovarian cancer progression and metastasis Nazia Bano, J. Browning, Isabelle Lewis, Malaika Amin, Piper O. Zimmerman, Lina Lee, Eva-Maria Schmelz 2026-02-25 Frontiers in Cell and Developmental Biology 0 6
visibility_off Evolutionary dynamics of early and late mutational signatures in metastatic cancer A. Yankovskiy, Sudhir Kumar, Sayaka Miura 2026-03-05 Frontiers in Bioinformatics 0 14
visibility_off Molecular Signatures and Network Alterations Underlying GBM Progression and Recurrence. Andrea Pop Crisan, C. Ciocan, R. Pîrlog, Alexandru Necula, Darius Adin Al Al Hajjar, L. Pruteanu, Constantin Busuioc, D. Pandey, A. Mohan, C. Braicu, I. Berindan‐Neagoe 2026-02-06 Medicina 0 61
visibility_off Integrative single‐cell analysis uncovers distinct tumour microenvironment ecotypes and immune evasion across skin cancers Lingjuan Huang, Huihui Hou, Xiyuan Zhang, Liang Dong, Wensheng Shi, Mason Liu, Jie Sun, A. Prakash, Haoqiu Song, Shiyao Pei, Xin Li, Xiang Chen, Shenglin Mei, Mingzhu Yin 2026-02-01 Clinical and Translational Medicine 0 14
visibility_off Comprehensive single-cell metabolic profiling identifies targets to sensitize triple-negative breast cancer to chemo-immunotherapy Ying Xu, Xin-Yi Liu, Hang Zhang, Li Chen, Han Wang, Zhiming Shao, Yi Xiao, Yizhou Jiang 2026-03-01 Cell Reports Medicine 0 22
visibility_off Unlocking glioma vulnerabilities: targeting regulated cell death pathways for innovative therapies Jincai Guo, Lijuan Zong, Ying Huang, Xiang Liu, Yixiang Hu, Ya Liu 2026-02-10 Cell Death Discovery 0 5
visibility_off ATAClone: Cancer Clone Identification and Copy Number Estimation from Single-cell ATAC-seq Lachlan Cain, A. Trigos 2026-03-13 bioRxiv 0 11
visibility_off Stochastic modelling of prostate progenitor architecture Christo Morison, E. Baena, Weini Huang 2026-02-26 Computers in biology and medicine 0 2
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