ecDNA forecasting

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Manually curated articles on ecDNA forecasting

Abstract Title Authors Publication Date Journal/ Conference Citation count Highest h-index View recommendations
visibility_off Extrachromosomal DNA in Cancer. V. Bafna, P. Mischel 2022-05-24 Annual review of genomics and human genetics 39 105 open_in_new
visibility_off Extrachromosomal DNA: An Emerging Hallmark in Human Cancer. Sihan Wu, V. Bafna, Howard Y. Chang, P. Mischel 2021-11-09 Annual review of pathology 83 138 open_in_new
visibility_off EcDNA hubs drive cooperative intermolecular oncogene expression King L. Hung, K. Yost, Liangqi Xie, Quanming Shi, K. Helmsauer, J. Luebeck, R. Schöpflin, Joshua T. Lange, R. Chamorro González, Natasha E Weiser, Celine Y. Chen, Maria E. Valieva, I. Wong, Sihan Wu, S. R. Dehkordi, Connor V. Duffy, K. Kraft, Junfang Tang, J. Belk, John C. Rose, M. Corces, Jeffrey M. Granja, Rui Li, Utkrisht Rajkumar, Jordan Friedlein, A. Bagchi, Ansuman T. Satpathy, R. Tjian, S. Mundlos, V. Bafna, A. Henssen, P. Mischel, Zhe J. Liu, Howard Y. Chang 2020-11-20 bioRxiv 115 146 open_in_new
visibility_off Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers Hoon Kim, Nam Nguyen, Kristen M. Turner, Sihan Wu, A. Gujar, J. Luebeck, Jihe Liu, Viraj Deshpande, Utkrisht Rajkumar, Sandeep Namburi, S. Amin, E. Yi, F. Menghi, J. Schulte, A. Henssen, Howard Y. Chang, C. Beck, P. Mischel, V. Bafna, R. Verhaak 2020-07-19 Nature genetics 365 138 open_in_new
visibility_off Chromothripsis drives the evolution of gene amplification in cancer Ofer Shoshani, Simon F. Brunner, R. Yaeger, P. Ly, Yael Nechemia-Arbely, D. H. Kim, Rongxin Fang, Guillaume A. Castillon, Miao Yu, Julia S Z Li, Ying Sun, Mark Ellisman, B. Ren, P. Campbell, D. Cleveland 2020-12-23 Nature 320 159 open_in_new
Abstract Title Authors Publication Date Journal/ Conference Citation count Highest h-index View recommendations

Abstract Title Authors Publication Date Journal/Conference Citation count Highest h-index
visibility_off The role of extrachromosomal DNA in tumorigenesis and progression Xiaoyang Ma, Xiaolin Yu, Chuan Wu, Lixing Song 2025-09-15 Frontiers in Oncology 0 0
visibility_off Extrachromosomal Circular DNA as a Cancer Biomarker: From Diagnosis to Treatment Hexin Li, Jiahui Cai, Gang Zhao, Lihui Zou 2025-09-08 Cancer Innovation 0 0
visibility_off Comparative Analysis of CHEK1, Extrachromosomal DNA Dynamics and 1p/19q Status in Lower Grade and High Grade Glioma MD Steven Lehrer, MD JD MS Peter Rheinstein 2025-10-05 None 0 0
visibility_off eccDNABase: A Comprehensive and High-Quality Database for Extrachromosomal Circular DNA Jin-Hao Zhang, Chang-Lin Yang, Chang-Yuan Ren, Ji Shi, Han-Xiao Zhou, Ying Zhang, Zhi-Yan Sun, Tao Jiang, Zheng Zhao 2025-09-13 Molecular Biology and Evolution 0 2
visibility_off DNA methylation cooperates with genomic alterations during non-small cell lung cancer evolution F. Gimeno-Valiente, C. Castignani, E. Larose Cadieux, Nana E. Mensah, Xiaohong Liu, Kezhong Chen, O. Chervova, Takahiro Karasaki, C.E. Weeden, Corentin Richard, Siqi Lai, Carlos Martínez-Ruiz, E. Lim, A. Frankell, T. Watkins, Georgia Stavrou, Ieva Usaite, Wei-Ting Lu, Daniele Marinelli, S. Saghafinia, G. Wilson, P. Dhami, H. Vaikkinen, Jonathan Steif, S. Veeriah, R. Hynds, Martin Hirst, C. Hiley, A. Feber, Özgen Deniz, M. Jamal-Hanjani, N. Mcgranahan, Stephan Beck, J. Demeulemeester, M. Tanić, C. Swanton, P. Van Loo, N. Kanu 2025-09-01 Nature Genetics 0 70
visibility_off Research Advances of Extrachromosomal Circular DNA in Breast Cancer Xiaodan Zhu, Yiyang Qian, Quan Tang, Jiahui Li, Yuqing Geng, Shixia Gong, Chunhui Jin 2025-10-01 Cancer Medicine 0 2
visibility_off Preservation and Clonal Behavior of Extrachromosomal DNA in Patient-Derived Xenograft Models of Childhood Cancers. Rishaan Kenkre, Jon D. Larson, Owen S. Chapman, J. Luebeck, Yan Yuen Lo, Megan Paul, Wenshu Zhang, V. Bafna, Robert J Wechsler-Reya, Lukas Chavez 2025-08-19 bioRxiv : the preprint server for biology 0 74
visibility_off Seq2Karyotype (S2K): A Method for in-silico Karyotyping Using Single-Sample Whole-Genome Sequencing Data Limeng Pu, Karol A. Szlachta, Virginia Valentine, Meiling Jin, Sivaraman Natarajan, Robert Greenhalgh, Nadezhda V. Terekhanova, Jian Wang, Daniel K. Putnam, Li Dong, Lingxiang Jiang, Soumya Tumbath, Xiumei Huang, Xiaotu Ma, Thomas Look, Marcin W. Włodarski, Lu Wang, Steven Burden, J. Easton, Xiang Chen, Jinghui Zhang 2025-08-27 bioRxiv 0 67
visibility_off Cancer subclone detection based on DNA copy number in single-cell and spatial omic sequencing data. Chi-Yun Wu, Jiazhen Rong, A. Sathe, Paul R Hess, Billy T Lau, Susan M. Grimes, Sijia Huang, Hanlee P. Ji, Nancy R. Zhang 2025-09-01 Nature methods 1 18
visibility_off From Viral Infection to Genome Reshaping: The Triggering Role of HPV Integration in Cervical Cancer Junlan Li, Shuang Li 2025-09-01 International Journal of Molecular Sciences 0 0
visibility_off Mammalian H4K16ac regulates the spatiotemporal order of genome replication rather than gene expression Marta Milan, Valeria Runfola, Manthan Patel, Lucia Falbo, R. Noberini, C. Soriani, S. Rodighiero, Tiziana Bonaldi, Vincenzo Costanzo, Madapura M. Pradeepa, Paola Scaffidi 2025-09-23 Nucleic Acids Research 0 24
visibility_off Extrachromosomal DNA–Driven Oncogene Spatial Heterogeneity and Evolution in Glioblastoma I. Noorani, Magnus Haughey, J. Luebeck, Andrew Rowan, E. Grönroos, Francesco Terenzi, I. Wong, Davide Pradella, Marta Lisi, Jeanette Kittel, Natasha Sharma, Chris Bailey, C. Weeden, Donald M Bell, Eric Joo, Vittorio Barbè, Matthew G. Jones, King L. Hung, E. Nye, M. Green, Lucy Meader, Emma Norton, Mark Fabian, N. Kanu, M. Jamal-Hanjani, T. Santarius, Andrea Ventura, James A R Nicoll, D. Boche, Howard Y. Chang, V. Bafna, Weini Huang, P. Mischel, C. Swanton, Benjamin Werner 2025-09-08 Cancer Discovery 0 74
visibility_off Multi-Layered Dysregulation of NRCAM in Gliomas: Insights from TCGA Copy Number and Epigenetic Analyses MD Steven Lehrer, MD JD MS Peter H. Rheinstein 2025-08-21 None 0 0
visibility_off Super-enhancer DNA methylation in cancer: the mechanism of action and therapeutic directions Yue Bi, Kang Zou, Ke Wang 2025-10-01 Frontiers in Oncology 0 0
visibility_off The isoflavone genistein selectively stimulates major satellite repeat transcription in mouse heterochromatin Thomas Fuhrmann, N. Shukeir, Reagan W. Ching, Galina Erikson, Yuan Dou, Zoe Sawitzki, Megumi Onishi-Seebacher, Carmen Galán, Thomas Jenuwein 2025-08-25 Epigenetics & Chromatin 0 14
visibility_off Single-cell Genomic Copy Number Evolution Reveals Frequent Loss of the Y chromosome in Esophageal Adenocarcinoma. Shiwei Yin, Na Zhong, Swati Agrawal, Bingru Feng, Sneha Pradhan, Nathan K. Jobalia, Maryam Vaziripour, Sampath K Poreddy, L. Kresty, Erin A Gillaspie, Nicholas E Dietz, W. Al-Refaie, K. Nandipati, Yusi Fu, Jun Xia 2025-09-17 bioRxiv : the preprint server for biology 0 40
visibility_off Tracking clonal evolution during treatment in ovarian cancer using cell-free DNA. Marc J. Williams, I. Vázquez-García, Grittney K. Tam, Michelle Wu, Nancy Varice, Eliyahu Havasov, Hongyu Shi, Duaa H Al-Rawi, Gryte Satas, Hannah Lees, J. Lee, Matthew A. Myers, Matthew Zatzman, Nicole Rusk, Emily Ali, Ronak H Shah, Michael F. Berger, Neeman Mohibullah, Yulia Lakhman, Dennis S Chi, N. Abu-Rustum, Carol Aghajanian, Andrew McPherson, Dmitry Zamarin, Brian Loomis, Britta Weigelt, C. Friedman, Sohrab P. Shah 2025-10-01 Nature 0 90
visibility_off Chromosomal instability and genomic alterations in cholangiocarcinoma from Northeastern Thailand. Raksawan Deenonpoe, MA Guscott, Sasithorn Watcharadetwittaya, Isabel L McNeill, D. Moralli, N. Shaikh, SE McClelland 2025-09-15 The Journal of pathology 0 25
visibility_off Impact of Chromosomal Instability and Aneuploidy in Cancer Development Amanda K. Mennie, Brittiny Dhital, Peter Ly 2025-09-30 Annual Review of Cancer Biology 0 3
visibility_off Meiotic cohesin RAD21L shapes 3D genome structure and transcription in the male germline Laia Marín-Gual, Covadonga Vara, Raquel Sainz-Urruela, Yasmina Cuartero, Lucía Álvarez-González, Natalia Felipe-Medina, Francisca Garcia, E. Llano, M. Martí-Renom, A. Pendás, A. Ruiz-Herrera 2025-10-01 Science Advances 0 56
visibility_off Transcriptional Condensates: Epigenetic Reprogramming and Therapeutic Targets in Hematologic Malignancies Kevin Qiu, Qing Yin, Chongzhi Zang, Jianguo Tao 2025-09-27 Cancers 0 1
visibility_off Enhancer regulation in cancer: from epigenetics to m6A RNA modification. Arathy Vasukutty, Poshan Yugal Bhattarai, Hong Seok Choi 2025-08-19 Archives of pharmacal research 0 6
visibility_off Coregulators determine androgen receptor activity in prostate cancer. Kerim Yavuz, Nathan A. Lack 2025-08-20 Bioscience reports 0 4
visibility_off Abstract B010: Long-read sequencing of high-grade serous ovarian carcinoma genomes: Insights into structural variants and allele-specific DNA methylation Jessica D. Lang, Ryan Moreno, Kristin M Adams, Lauren Kersten 2025-09-19 Cancer Research 0 1
visibility_off The Non-Coding Mutational Landscape of Pancreatic Cancer Reveals Recurrent Somatic Mutations in Enhancer Regions. Akimasa Hayashi, Yu-Jui Ho, Alvin P. Makohon-Moore, Amanda Zucker, Jungeui Hong, Shigeaki Umeda, Elias-Ramzey Karnoub, Jinlong Huang, Priscilla Baez, R. Kappagantula, Jerry P Melchor, Wungki Park, Eileen M. O’Reilly, Nicholas D Socci, Shinya Oki, Christine A. Iacobuzio-Donahue 2025-09-19 Cancer research communications 0 26
visibility_off The interplay of DNA damage, epigenetics and tumour heterogeneity in driving cancer cell fitness Celia D Rouault, E. Charafe-Jauffret, C. Ginestier 2025-09-30 Nature Communications 0 56
visibility_off MyClone: rapid and precise reconstruction of clonal population structures for tumors Qihan Guo, Dan Lv, Bo Lan, Haili Qian, Fei Ma, Ting Chen 2025-10-08 BMC Bioinformatics 0 7
visibility_off P05.12.B ULTRASENSITIVE INTEGRATED GENOMIC-EPIGENETIC CTDNA CNS TUMOR ASSAY USING TET-ASSISTED PYRIDINE BORANE SEQUENCING (TAPS) M. Snuderl, C. Fang, E. Freitag, A. Oviedo, C. Schroff, K. Hadi, A. Deshpande, J. Rafailov, H. Weiss, N. Dhasmana, D. Orringer, K. Wrzeszczynski, M. Imielinski, A M Miller 2025-10-01 Neuro-Oncology 0 7
visibility_off Abstract B004: Evaluating spatial inter-tumor heterogeneity in whole genome duplication states and homologous recombination deficiency status in advanced ovarian high grade serous carcinoma P. Cunnea, Nikki L Burdett, Marc Lorentzen, A. Pandey, James Clark, K. Nixon, J. Ploski, Shirya Varghese, D. Bowtell, J. Krell, Elizabeth L. Christie, C. Fotopoulou 2025-09-19 Cancer Research 0 32
visibility_off Extrachromosomal DNA: A Trusted Path to Tumor Heterogeneity. Emmanuel E Korsah, Noah A Dusseau, Eunhee Yi 2025-10-06 Cancer discovery 0 3
visibility_off Human papillomavirus genomes associate with active host chromatin during persistent viral infection Alix Warburton, T. E. Markowitz, JJ L. Miranda, Kinjal Majumder, Alison A. McBride 2025-09-01 PLOS Pathogens 0 14
visibility_off Combinatorial DNMTs and EZH2 inhibition reprograms the H3K27me3 and DNAme-mediated onco-epigenome to suppress multiple myeloma proliferation Alba Atienza Párraga, P. Nylund, K. Diamanti, Berta Garrido-Zabala, Stefania Iliana Tziola, Louella Vasquez, P. Pyl, D. Raykova, Aron T. Skaftason, Anqi Ma, Jian Jin, J. Martín-Subero, Fredrik Öberg, Elke De Bruyne, Jan Komorowski, Helena Jernberg Wiklund, A. Kalushkova 2025-08-27 Scientific Reports 0 59
visibility_off Genetic landscape of cancer: mechanisms, key genes, and therapeutic implications. Arun Karnwal, Joydeep Dutta, Aqueel-Ur-Rehman, Abdel Rahman Mohammad Said Al-Tawaha, Natalia Nesterova 2025-08-17 Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico 1 10
visibility_off Fidelity, specialization, and evolution of Paramecium PolX DNA polymerases involved in programmed double-strand break DNA repair Nourisson Antonin, Missoury Sophia, Lucas-Staat Soizick, Haouz Ahmed, Delarue Marc 2025-08-11 Nucleic Acids Research 0 0
visibility_off Interrogating the regulatory epigenome of cellular senescence Dimitris-Foivos Thanos, Orestis A. Ntintas, Emmanouil Athanasiadis, A. Papaspyropoulos, R. Petty, V. Gorgoulis 2025-08-31 Cellular and Molecular Life Sciences: CMLS 0 78
visibility_off Detection and monitoring of translocation renal cell carcinoma via plasma cell-free epigenomic profiling. S. Garinet, Karl Semaan, Jiao Li, Ananthan Sadagopan, J. Canniff, Noa Phillips, K. Klega, Medha Panday, H. Savignano, Matthew P Davidsohn, Kevin Lyons, Alessandro Medda, Prateek Khanna, M. Achom, Prathyusha Konda, Brad Fortunato, Rashad Nawfal, Razane El Hajj Chehade, Ze Zhang, Jillian O’Toole, J. Horst, Dory A Freeman, Rachel Trowbridge, C. Chau, William D. Figg, Jacob E. Berchuck, Brian D Crompton, J-H. Seo, T. Choueiri, M. Freedman, S. Baca, Srinivas R Viswanathan 2025-09-04 bioRxiv : the preprint server for biology 0 30
visibility_off SFPQ Promotes Homologous Recombination via mRNA Stabilization of RAD51 and Its Paralogs Sofia Gotthold, Keile R. Hansen, Andrew N. Brown, Soham P. Chowdhury, Hannah I. Ghasemi, Amanda C. Yoon, Christine M. Joyce, Julien Bacal, Brooke M. Gardner, Chris D. Richardson 2025-09-08 bioRxiv 0 2
visibility_off Small round cell sarcoma tumoroid biobank reveals CIC::DUX4 sarcoma vulnerability to MCL-1 inhibition F. Ringnalda, Gijs J. F. van Son, Laurens H G Verweij, Seok-Young Kim, Vicky Amo-Addae, U. E. Flucke, L. Hiemcke-Jiwa, Karin P S Langenberg, Jos A. M. Bramer, L. Heimans, M. A. van de Sande, W. V. van Houdt, Max M. van Noesel, H. Kerstens, Marcel Santoso, Georg Seifert, O. Delattre, Katia Scotlandi, B. Geoerger, J. H. Merks, J. Molenaar, R. van Boxtel, M. van de Wetering, K. Sanders, H. Clevers 2025-08-21 Nature Communications 0 44
visibility_off Synthetic ZFTA fusions pinpoint disordered protein domain acquisition as a mechanism of brain tumorigenesis A. Arabzade, H. K. Shirnekhi, S. Varadharajan, S. M. Ippagunta, A. Phillips, N. Laboe, D. W. Baggett, Wahiduzzaman, M. Jo, T. Zheng, R. Pathak, D. Gee, D. Bhimsaria, H. Wu, X. Gao, J. Liu, E. Emanus, A. Bland, A. Kardian, A. Hancock, B. Holcomb, T. Wright, T. Bugbee, H. Sun, M. Zhai, E. Caesar, M. Park, S. Tripathi, A. Shirinifard, K. Lowe, A. Khalighifar, R. A. Petersen, S. King, D. Stabley, A. Pitre, G. Campbell, C-G Park, W. T. Freyaldenhoven, B. Chandra, Y. Xia, E. Bonten, A. Achari, S. Kandikonda, A. Carisey, S. Pounds, J. Xu, D. W. Ellison, B. Deneen, K. Bertrand, R. Kriwacki, S. C. Mack 2025-08-27 Nature Cell Biology 0 43
visibility_off KAT5-mediated acetylation of PC4 facilitates DNA repair by promoting chromatin reorganization Aa yushi A gr a w al, eta Sikder, Siddharth Singh, Rakesh Kumar, Nikhil Pallaprolu, Kalyan Mitra, Sourav Mondal, Rupa Mukhopadhy, anta Sarkar, Ramaling am Per aman, Ra vic, Tapas K. Kundu 2025-09-23 Nucleic Acids Research 0 15
visibility_off TP63 mediates the generation of tumour-specific chromatin loops that underlie MYC activation in radiation-induced tumorigenesis Qiaowei Liu, Shuai Jiang, Xiang Xu, Kang Xu, Yawen Luo, Zongyuan Yu, Meida Xiang, Zhouyang Xu, Lijie Wang, Sujie Zhang, H. Tao, Xuhui Yang, Chongbo Jiang, Xiaoguang Qi, Hao Li, Yiming Gao, Yao Li, Shihui Fu, Pingkun Zhou, Xiaochen Bo, Hebing Chen, Xiaohua Chen, Yi Hu 2025-09-30 Nature Communications 0 19
visibility_off DNA methylation analysis reveals an epigenetic signature distinctive of high-grade oligodendroglioma Katharina J. Weber, M. Dettki, M. Münzberg, P. Zeiner, Marie-Thérèse Forster, Eike Steidl, I. Divé, Patrick N Harter, Michael Scherer 2025-08-23 Acta Neuropathologica 0 17
visibility_off Topo IV is required to allow replisomes to converge and complete replication on the chromosome Parisa D Mokhtari, Tannos Seyedjavadi, Thulni A Liyanaarachchi, C. T. Courcelle, J. Courcelle 2025-09-01 PLOS Genetics 0 25
visibility_off Transforming Cancer Diagnostics: The Emergence of Liquid Biopsy and Epigenetic Markers Debalina Saha, Pritam Kanjilal, Mandeep Kaur, Soumya V. Menon, Ayash Ashraf, M. Kumar, T. Alqahtani, Shikha Atteri, D. Uti, Bikram Dhara 2025-09-01 MedComm 1 17
visibility_off APOBEC3A drives deaminase mutagenesis in human gastric epithelium Yohan An, Ji-Hyun Lee, Joonoh Lim, J. Youk, Seongyeol Park, Ji-Hyung Park, Kijong Yi, Taewoo Kim, Chang Hyun Nam, Won Hee Lee, Soo A Oh, Yoo Jin Bae, Thomas M. Klompstra, Haeun Lee, Jinju Han, Junehwak Lee, Jung Woo Park, Jie-Hyun Kim, Hyunki Kim, Hugo Snippert, B. Koo, Young Seok Ju 2025-08-26 Genome Research 0 15
visibility_off High MGMT expression identifies aggressive colorectal cancer with distinct genomic features and immune evasion properties J. Zhang, B. K. Rajendran, Shruti S Desai, Joanna Gibson, Jassim DiPalermo, Patricia LoRusso, Yong Kong, Hongyu Zhao, Michael Cecchini, K. Schalper 2025-09-01 Journal for Immunotherapy of Cancer 0 64
visibility_off Targeting ORMDL2 in glioblastoma through integrated landscape of high-throughput sequencing and pharmacogenomic analysis Fitria Sari Wulandari, Chih-Yang Wang, Sachin Kumar, Ngoc Phung Ly, Juan Lorell Ngadio, Dahlak Daniel Solomon, Do Thi Minh Xuan, Gabriela Natasha Sutandi, Hung-Yun Lin, Hui-Ru Lin, Yung-Kuo Lee, Hao-Chien Yang, , Ching-Chung Ko 2025-09-27 International Journal of Medical Sciences 0 6
visibility_off A dominant SRCAP truncating mutation promotes squamous cell carcinoma progression S. Droll, Elena I. O. Dewar, Celia Xue, Maxwell C Levine, Benny J Zhang, Xiaomin Bao 2025-08-26 Oncogenesis 0 5
visibility_off Targeting the TRIB3-MYC axis in cancer: mechanistic insights and therapeutic disruption strategies. Emadeldin M. Kamel, Sulaiman A. Alsalamah, A. A. Allam, Noha A. Ahmed, F. F. Alkhayl, Al Mokhtar Lamsabhi 2025-09-04 Investigational new drugs 0 15
visibility_off Phase-separating fusion proteins drive cancer by upsetting transcription regulation Nazanin Farahi, Tamas Lazar, Peter Tompa, Bálint Mészáros, Rita Pancsa 2025-10-02 Genome Biology 0 28
visibility_off Epidrugs in cancer: mechanisms, applications, and future direction. Roshni Bibi, Lakshmi Varshetha, Rakshit Kamal Lahary, Jahnavi Namburi, Fardeen Ahmed Laskar, Koustav Sarkar 2025-10-08 Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico 0 2
visibility_off Learning the cellular origins across cancers using single-cell chromatin landscapes Mohamad D. Bairakdar, Wooseung Lee, Bruno Giotti, Akhil Kumar, Paula Štancl, Elvin Wagenblast, Dolores Hambardzumyan, P. Polak, R. Karlić, A. Tsankov 2025-09-17 Nature Communications 1 17
visibility_off Designer Frankenproteins That Halt the Proliferation of Myc-Driven Cancer Cells. Maryam Ali, Raneem Akel, Francine He, Micheline Piquette-Miller, Jumi A Shin 2025-09-03 Journal of medicinal chemistry 1 2
visibility_off Gabija restricts phages that antagonize a conserved host DNA repair complex Alex Hong, Miaoxi Liu, Alexis Truta, Alexander Talaie, Gerald R Smith, Joseph Bondy-Denomy 2025-08-30 bioRxiv 0 47
visibility_off hnRNPL–CstF64 complex: coordinating CSR and LSR in IgH locus recombination dynamics through eRNA and NHEJ regulation Farazul Haque, Mikiyo Nakata, H. Kosako, Tasuku Honjo, N. Begum 2025-08-27 Nucleic Acids Research 0 42
visibility_off Transposable elements in health and disease: Molecular basis and clinical implications Yaqiang Hong, Nian Liu 2025-08-15 Chinese Medical Journal 0 3
visibility_off PA2G4 Functions as a Cofactor for MYC Family Oncoproteins in MYC-Driven Malignancies Sukriti Krishan, J. Koach, Taylor Lim, Kenny K. L. Yeo, Faith Cheong, Jie-Si Luo, Hassina Massudi, Xiaomian Gao, Sopheakwealthy Heangsarath, Andrew J Kueh, Marco J. Herold, B. Cheung, Glenn M. Marshall 2025-09-01 Cells 0 31
visibility_off POLD3 knockdown effects on low-grade glioma: insights from bioinformatics and experimental validation Zhihui Yang, Zhonghao Dou, Hao Wang, Zhaojiang Hu, Yanbo Gao, Yilei Bai, Junfeng Liu, Rongjun Qian 2025-10-01 BMC Cancer 0 6
visibility_off The role of lncRNA SNHG15 in UV-induced DNA damage repair Xin Zhang, Jiahui Lin, Zixuan Fan, Sai Zhang, Meiqi Yang, Tingting Zhu, Qing Lu, Yuming Wang 2025-10-09 PLOS One 0 0
visibility_off Acetic acid produced by Staphylococcus epidermidis remodels chromatin architecture and suppresses gene expression in Malassezia restricta Jae Min Lee, Hyun Oh Yang, Hideki Tanizawa, Ken-ichi Noma, Tae Kwon Lee, W. H. Jung, Yong-Joon Cho, Kyoung-Dong Kim 2025-09-12 mBio 0 15
visibility_off Abstract A037: POLQ inhibitors induce replication stress and apoptosis in high-grade serous ovarian cancer: Functional and genomic biomarkers of response Aleksandra Kruglikov 2025-09-19 Cancer Research 0 0
visibility_off Berberine Sensitises Breast Cancer Cells to Radiation via the Attenuation of DNA Ligase III Yuxin Sun, Cong Li, Hang Yin, Kunyan Li, Ying Wang, Shuailong Zhang, Yi Zhao, Jing Wang, Weifeng Mao 2025-09-01 Journal of Cellular and Molecular Medicine 0 2
visibility_off Abstract IA024: Frontiers of tumor evolution in ovarian cancer Sohrab P. Shah 2025-09-19 Cancer Research 0 4
visibility_off Tracing the evolution of single-cell 3D genomes in Kras-driven cancers. Miao Liu, Shengyan Jin, Sherry S Agabiti, Tyler B Jensen, Tianqi Yang, Jonathan S. D. Radda, Christian F. Ruiz, Gabriel Baldissera, Moein Rajaei, Fangyong Li, Jeffrey P. Townsend, M. Muzumdar, Siyuan Wang 2025-08-18 Nature genetics 0 14
visibility_off Unraveling the Epigenetic Landscape of Mature B Cell Neoplasia: Mechanisms, Biomarkers, and Therapeutic Opportunities Nawar Maher, F. Maiellaro, J. Ghanej, S. Rasi, R. Moia, G. Gaidano 2025-08-22 International Journal of Molecular Sciences 0 35
visibility_off Chromatin-associated circRNA ciCRLF3(2) regulates cell differentiation blockage via activating non-homologous end joining-based DNA repair. Ke-Jia Pu, Xiao-Tong Chen, Shun-Xin Zhu, Yan An, Xin-Yi Feng, Heng-Jing Huang, Cheng-Lin Zhou, Mei-Ying Ye, Yun-Chun Wei, Yi-Xuan Ma, Chen Fang, Nan Zhang, Dan Wang, Bin-Rong Han, Jun-Yi Lian, Tian-Qi Chen, Yumeng Sun, Yue-Qin Chen, Wentao Wang 2025-09-04 Cell death and differentiation 0 23
visibility_off Characterization of the extrinsic and intrinsic signatures and therapeutic vulnerability of small cell lung cancers Gui-zhen Wang, Zheng Wang, Shi-Hao Bai, Yun Tan, Wen-Zhao Zhong, Guo-Gui Sun, Yu-Tao Liu, B. Pan, Chen Huang, Di Wang, Beibei Sun, Dong-Ni Chen, Bin Zhang, Yong-Chun Zhou, Sheng Li, Xiang-Wei Zhang, Si-Chong Han, Fu-ying Yang, Xue-Yan Shi, Xiao-Liang Jie, Yu-Ke Shen, L. Liang, Zhe-Sheng Wen, Li Zhang, Mingkun Li, Na Wang, Jin-Song Liu, Ying Dong, Manli Wang, Yan Wang, Chang-Li Wang, Dawei Xie, Ze-Guang Han, Jian-Ming Ying, Chong Chen, Yunchao Huang, Hongbin Ji, Yuan-Yuan Zhang, Yan Yu, Guang-Biao Zhou 2025-09-10 Signal Transduction and Targeted Therapy 0 17
visibility_off Comparison of current methods for genome-wide DNA methylation profiling Ana Regina de Abreu, J. Ibrahim, Vasileios Lemonidis, Ligia Mateiu, Guy Van Camp, K. Op de Beeck 2025-08-25 Epigenetics & Chromatin 0 24
visibility_off Influence of Epigenetic Regulators Expression on Gastric Cancer Prognosis Lucas Brabo Rotella, A. Khayat, Monique Feitoza, Victoria Pereira Costa, Diego Pereira, Fabiano Cordeiro Moreira, S. Demachki, Samir Mansour Moraes Casseb, G. Ishak, W. Barra, R. Burbano, P. P. D. Assumpção 2025-09-15 None 0 27
visibility_off Cancer histone mutations impact protein binding and DNA repair with possible links to genomic instability Daniel Espiritu, Yiru Sheng, Yunhui Peng, Daria Ostroverkhova, Shuxiang Li, David Landsman, Maria J Aristizabal, Anna R. Panchenko 2025-09-05 Nucleic Acids Research 0 3
visibility_off Imbalanced chromatin distribution in cellular senescence specifies paraspeckle dynamics Joonwoo Lee, Jinmi Choi, Jeongeun Park, Seonduk Lee, Eun-Jung Cho, Youngdae Gwon 2025-09-02 Genome Biology 0 12
visibility_off Diverse oncogenes use common mechanisms to drive growth of major forms of human cancer. O. Kauko, Mikko Turunen, Päivi Pihlajamaa, Antti Häkkinen, R. Queiroz, M. Pääkkönen, S. Ventelä, Massimilliano Gaetani, Susanna L. Lundström, Antonio Murgia, Biswajyoti Sahu, J. Routila, Gong-Hong Wei, H. Irjala, J.L. Griffin, Kathryn S. Lilley, Teemu Kivioja, S. Hautaniemi, J. Taipale 2025-08-22 Science advances 0 74
visibility_off Camptothecin, a topoisomerase I inhibitor, impedes productive herpes simplex virus type 1 infection Joseph R Heath, Alison E. Lloyd, Raegen M. Kulinski, Daniel P Fromuth, Jill A. Dembowski 2025-08-28 Journal of Virology 0 12
visibility_off The epigenetics effects of transposable elements are genomic context dependent and not restricted to gene silencing in Drosophila Marta Coronado-Zamora, Josefa González 2025-08-18 Genome Biology 0 5
visibility_off Mechanisms and genomic implications of break-induced replication. Adel Atari, Haoyang Jiang, Roger A. Greenberg 2025-08-22 Nature structural & molecular biology 0 5
visibility_off KAT6A chimeras form a self-reinforcing epigenetic module with NURF and MLL/COMPASS to sustain AML Junhui Lv, Zhinang Yin, Conghui Li, Honglin Wen, Jian Ni, Peiyuan Yang, Zemin Song, Ying Xiang, Honghong Wang, Rui Lu, Li Huang, Ying Zhou, Hai-Bing Zhou, Ruijing Xiao, Pingping Fang, Kaiwei Liang 2025-08-19 Genome Biology 0 9
visibility_off Distinct and convergent effects of SF3B1 mutations in human breast cancer. Riley E. Bergman, Christin I Keeton, Irika R. Sinha, Jonathan P. Ling, Yu Wang, Lauren Ha, Eshani P Mehta, S. C. Reed, Ethan K Fox, Tina M. O'Grady, Yingying Yu, Stamatina Fragkogianni, Calvin Chao, Brad A. Davidson, Adam X. Miranda, S. Croessmann, Shilin Zhao, Qi Liu, Yu Shyr, W. Dalton, Paula J Hurley, B. Park 2025-10-07 Proceedings of the National Academy of Sciences of the United States of America 0 20
visibility_off Genetic and epigenetic landscape of O6-methylguanine-DNA methyltransferase (MGMT): implications for DNA repair and cancer therapeutics Shishir Singh, Rajeev Nema, M. Banerjee, Atar Singh Kushwah 2025-08-28 Exploration of Targeted Anti-tumor Therapy 0 13
visibility_off esBAF and INO80C fine-tune subcompartments and differentially regulate enhancer-promoter interactions Braulio Bonilla, Benjamin J. Patty, Snehal Sambare, Job Dekker, T. Fazzio, Sarah J. Hainer 2025-09-18 bioRxiv 0 28
visibility_off Divergent Clonal Evolution and Early Dissemination Promote Genetic Heterogeneity of Metastases in Castration Resistant Prostate Cancer. Noshad Hosseini, R. Mannan, Ryan J. Rebernick, Fengyun Su, Rui Wang, Xuhong Cao, Ana Lako, Dattatreya Mellacheruvu, Jing Hu, J. Alumkal, Zachery R. Reichert, Rohit Malik, Rohit Mehra, A. Chinnaiyan, M. Cieslik 2025-08-18 Cancer research 0 169
visibility_off Excessive DNA Double-Strand Breaks-Associated 3D Genome Reorganization Contributes to Neural Tube Defects with Folate Deficiency. Ting Zhang, Lin Lin, Jianting Li, Caihua Li, Shengjun Liang, Xuemei Bai, Fang Wang, Yihua Bao, Dan Guo, Xiaochen Bo, Hao Li, Hebing Chen, Qiu Xie 2025-09-18 Advanced science 0 17
visibility_off [Exploration of ribosomal DNA copy number as an early biomarker for exposure to chemical carcinogens]. C. Ding, H. D. Xu, J. L. Lou 2025-08-20 Zhonghua lao dong wei sheng zhi ye bing za zhi = Zhonghua laodong weisheng zhiyebing zazhi = Chinese journal of industrial hygiene and occupational diseases 0 0
visibility_off Age-Driven Genetic and Epigenetic Heterogeneity in B-ALL Yoana Veselinova, M. Esteller, Gerardo Ferrer 2025-09-01 International Journal of Molecular Sciences 0 3
visibility_off Caliban is a transcriptional target of p53 in response to DNA damage Jiaqian Cui, Haiyan Zhang, Yan Cheng, Xiaolin Bi, Dong Li 2025-08-28 PLOS One 0 1
visibility_off Recruitment of Mre11 to recombination sites during meiosis Corentin Claeys Bouuaert, Priyanka Priyadarshini, Mahesh Survi, Wael El Yazidi Mouloud, Regina Bohn, Steven Ballet, Neil Hunter, Alexander Volkov 2025-08-19 Research Square 0 6
visibility_off The exit from naive pluripotency: a platform for the study of enhancer mechanistics Mattias Enar Jonasson, C. Buecker 2025-08-18 Biochemical Society Transactions 0 11
visibility_off Unfolding ecDNA as a pan-cancer therapeutic target Yang Zhang, Ruirui Chen, Haiyun Gan 2025-10-07 Medical Review 0 0
visibility_off Landscape of long interspersed element-1 and Alu chimeric transcripts in breast tumors Jian Li, Yin Zhang, Yiting Zhou, Jianyou Liao, Yabin Guo 2025-09-03 Eurasian Journal of Medicine and Oncology 0 2
visibility_off Shared and non-overlapping functions of RECQL4 and BLM helicases in chemotherapeutics-induced glioma cell responses K. Wojnicki, B. Wojtaś, I. Ciechomska, B. Kaza, Matthew Guille, Waldemar Priebe, Bozena Kaminska 2025-09-29 BMC Cancer 0 23
visibility_off OS09.5.A RECURRENT COPY NUMBER ALTERATIONS DRIVE IDH-MUTANT ASTROCYTOMA DEVELOPMENT AND PROGRESSION S. Haider, K. Drucker, R. Tsai, K. Al-Zahrani, C. Chiu, T. Kollmeyer, G. Zadeh, R. Jenkins, D. Schramek 2025-10-01 Neuro-Oncology 0 25
visibility_off Abstract B024: Investigating a novel KIF18A inhibitor ATX020 in chromosomally instable ovarian cancer Jayakumar R. Nair, Maureen M. Lynes, Laura Ghisolfi, Serena J Silver, Jung-Min Lee 2025-09-19 Cancer Research 0 2
visibility_off Deciphering the Heterogeneity of Pancreatic Cancer: DNA Methylation-Based Cell Type Deconvolution Unveils Distinct Subgroups and Immune Landscapes Barbara Mitsuyasu Barbosa, Alexandre Todorovic Fabro, Roberto da Silva Gomes, C. Rainho 2025-09-01 Epigenomes 0 20
visibility_off Epigenetic relay: Polycomb-directed DNA methylation in mammalian development Teresa Urli, Maxim V. C. Greenberg 2025-09-01 PLOS Genetics 0 9
visibility_off H3K4me3 amplifies transcription at intergenic active regulatory elements. Haoming Yu, Yongyan Zhang, Zhicong Liao, B. W. Walters, Bluma J. Lesch 2025-08-18 Genes & development 0 13
visibility_off Tracing metastatic spread in pediatric solid tumors using copy number and targeted deep sequencing. Natalie Andersson, Michele Ferro, Caroline Jansson, Subhayan Chattopadhyay, Jenny Karlsson, David Gisselsson 2025-09-23 The Journal of pathology 1 6
visibility_off Multiple long-range cis interactions generate CTCF insulator-dependent viral chromatin domains in quiescent HSV-1 genomes Alyssa Richman, Sophie Kogut, Terri G. Edwards, Joseph R. Boyd, Princess D. Rodriguez, Michael Mariani, Mason A. Shipley, Kayley A Manuel, Ziyun A Ye, David C. Bloom, Seth Frietze, Donna M Neumann 2025-08-28 mBio 0 7
visibility_off The roles of NHEJ and TLS pathways in genomic alterations and phenotypic evolution in the yeast Yarrowia lipolytica Cen Yan, Ye-Ke Wang, Yuan-Ru Xiong, Xin-Qiu Zhou, Yuan-Chun Fang, Ruo-Tian Nie, Cunqi Ye, Ke Zhang, Dao-Qiong Zheng 2025-08-15 Applied Microbiology and Biotechnology 0 6
visibility_off Enabling whole-genome DNA methylation-based classification of central nervous system tumors Jonghoon Lee, Young Seok Ju, B.-L. Oh, S. Choi, Se Hoon Kim, Ji Won Lee, J. Phi, Y. Jung 2025-09-21 None 0 40
visibility_off FET fusion oncoproteins enrich SWI/SNF complex subtypes and interaction partners M. Lindén, Lisa Andersson, Heba Albatrok, Vilma Canfjorden, Emma Jonasson, Kajsa Grönqvist, Daniel Sjövall, Pekka Jaako, Rossella Crescitelli, Henrik Fagman, Pierre Åman, Anders Ståhlberg 2025-09-23 Cellular & Molecular Biology Letters 0 12
visibility_off RNA-mediated condensation of TFE3 oncofusions facilitates transcriptional hub formation to promote translocation renal cell carcinoma Lei Guo, Rongjie Zhao, Yi-Tsang Lee, Junhua Huang, James Wengler, Logan Rivera, Tingting Hong, Tianlu Wang, Kunjal Rathod, Ashley Suris, Yitian Wu, Xiaoli Cai, Rui Wang, Yubin Zhou, Yun Huang 2025-09-30 Nature Communications 0 10
visibility_off A Circular RNA Promotes Tumor Metastasis through Stabilizing MSI2 Protein in Pancreatic Ductal Adenocarcinoma Zhang Li, Lanyang Gao, Yang Yang, Yue Ming, Wenrong Liu, Tingting Zhang, Zixia Ye, Fuyan Xu, Juan He, Jiao Li, Jiawei Guo, Xiaojuan Yang, Qing Zhu, Yong Peng 2025-09-10 Research 0 6
visibility_off BRG1 Loss Is Frequent in Lung Cancer and Transforms Lung Epithelial Cells via Transcriptional and Epigenetic Reprograming M. Tessema, Christin M. Yingling, Loryn M. Phillips, K. Do, M. Picchi, R. Willink, Steven A. Belinsky 2025-09-01 Cancers 0 25
visibility_off Cell-Free DNA Bisulfite Sequencing Reveals Epithelial–Mesenchymal Transition Signatures for Breast Cancer M. S. Jeon, Zehuan Ding, Casey Pei, Jing Li, Linglin Xie, Edward Sauter, Ke Kurt Zhang 2025-09-01 International Journal of Molecular Sciences 0 2
visibility_off DUX4-rearranged B-ALL: deciphering a biological and clinical conundrum. Jack Bakewell, Anthony V Moorman, S. Ryan 2025-09-12 Leukemia 0 18
visibility_off Abstract A041: Neil2 is a potential theratputic targert in pancreatic cancer Fan Meng, Mustafa Raoof 2025-09-28 Cancer Research 0 1
visibility_off Non‐coding RNAs as key player in cancer diagnosis and treatment Marcin Majka 2025-09-01 FEBS Open Bio 0 0
visibility_off Dps binds and protects DNA in starved Escherichia coli with minimal effect on chromosome accessibility, dynamics and organisation Lauren A. McCarthy, Lindsey E. Way, Xiaofeng Dai, Zhongqing Ren, David E. H. Fuller, Ishika Dhiman, Linaria Larkin, Jurriaan J. D. Sieben, Ilja Westerlaken, E. Abbondanzieri, Gail G Hardy, Anne S. Meyer, Xindan Wang, Julie S. Biteen 2025-09-05 bioRxiv 0 15
visibility_off Multiple functions of the lysine methyltransferase KMT5a in cancer: potential targets for innovative therapies R. Della Monica, Michela Buonaiuto, Mariella Cuomo, Davide Costabile, Claudio Schonauer, G. Catapano, Lorenzo Chiariotti, Roberta Visconti 2025-09-29 Clinical Epigenetics 0 15
visibility_off EZH2 Dysregulation and Its Oncogenic Role in Human Cancers Shiv Verma, Nikita Goyal, Suhani Goyal, Parminder Kaur, Sanjay Gupta 2025-09-24 Cancers 0 15
visibility_off Strict retroelement regulation is frequently lost following cancer transformation and generates a promising reservoir of cancer biomarkers Eric Russ, Sergey Iordanskiy 2025-10-03 Mobile DNA 0 2
visibility_off Effects of DNA Methylation Inhibitors on Molecular and Structural Changes in Chromatin Organization in Leukemia Cells. Przemysław Sareło, A. Kaczorowska, Marlena Gąsior-Głogowska, Kinga Godkowicz, Weronika Lamperska, Sławomir Drobczyński, Ewa Zioło, Anna A Licznerska, Tomasz Wróbel, Halina Podbielska, Wojciech Kałas, M. Kopaczyńska 2025-09-29 Molecular and cellular biology 0 14
visibility_off Super-silencers are crucial for development and carcinogenesis in B cells Di Huang, H. Petrykowska, Dhaneshwar Kumar, L. Kardava, S. Moir, B. Afzali, L. Elnitski, Ivan Ovcharenko 2025-09-25 Nature Communications 0 38
visibility_off Pathogenic variants in MAEA disrupt DNA replication fork stability and are associated with developmental abnormalities in humans Elham Zeinali, Fatemeh Mashayekhi, Rabih Abou Farraj, Talah Hasanni, Marie-christine Caron, Yan Coulombe, A. Fitieh, J. N. M. Glover, Jean-Yves Masson, Ismail Hassan Ismail 2025-08-29 Science Advances 0 26
visibility_off Transcriptional Rewiring of BET Inhibitor Treated Ewing Sarcoma Cells Augments their Dependency on Focal Adhesion Kinase. Shireen S Ganapathi, Emma D. Wrenn, Nicolas M Garcia, Neerja Katiyar, Stephanie I. Walter, Aya Miyaki, Jonah R. Valenti, Yuqi Kang, Marina Chan, Taranjit S. Gujral, Elizabeth R. Lawlor 2025-09-06 bioRxiv : the preprint server for biology 0 22
visibility_off Targeting the 3D genome by anthracyclines for chemotherapeutic effects. Minkang Tan, Shengnan Sun, Yuchen Liu, Andrea A. Perreault, D. Phanstiel, Liping Dou, Baoxu Pang 2025-10-03 Proceedings of the National Academy of Sciences of the United States of America 0 18
visibility_off Replication-associated mechanisms contribute to an increased CpG > TpG mutation burden in mismatch repair-deficient cancers Joseph C Ward, Ignacio Soriano, Steve Thorn, Juan Fernández-Tajes, Kitty Sherwood, Güler Gül, Joost Scheffers, A. Frangou, Ben Kinnersley, Ioannis Kafetzopoulos, Duncan Sproul, Sara Galavotti, C. Palles, Andreas J. Gruber, David N. Church, Ian Tomlinson 2025-08-25 Genome Medicine 0 47
visibility_off KCTD10 is a sensor for co-directional transcription-replication conflicts. Jake A. Kloeber, Bin Chen, Guangchao Sun, Charles S King, Zhiquan Wang, Li Wang, Zheming Wu, Shouhai Zhu, Fei Zhao, Hongran Qin, Yaobin Ouyang, Huaping Xiao, X. Tu, Jing Lu, Yanxia Jiang, K. Luo, Ping Yin, Xinyan Wu, R. Mutter, Jinzhou Huang, Zhenkun Lou 2025-10-08 Nature 0 60
visibility_off The functions and regulation of transcription factor YBX1 in cancers. Aixin Qiu, Yue Zhang, Yihan Dong, Dan Yue, Yang Yu 2025-09-12 Molecular biology reports 0 1
visibility_off Abstract B072: Plasma whole-genome sequencing to monitor pancreatic cancer Yuanchang Fang, M. Chan-Seng-Yue, Karen Ng, Amy Zhang, Tuan Hoang, G. Jang, Sabiq Chaudhary, Eugenia Flores-Figueroa, Daniela Bevacqua, S. Ramotar, A. Borgida, S. Hutchinson, A. Dodd, Julie M. Wilson, Barbara Grünwald, Robert C. Grant, Erica S. Tsang, G. Zogopoulos, Jennifer J Knox, Masoom A. Haider, Stephen Gallinger, F. Notta 2025-09-28 Cancer Research 0 39
visibility_off The DNA replication machinery transmits dual signals to prevent unscheduled licensing and execution of centrosome duplication Kyohei Matsuhashi, Kei K Ito, Kaho Nagai, Akira Sanada, Koki Watanabe, Kasuga Takumi, Atsushi Toyoda, Masamitsu Fukuyama, Shohei Yamamoto, Takumi Chinen, Grant S Stewart, Shoji Hata, Daiju Kitagawa 2025-09-08 Nature Communications 0 26
visibility_off Mechanism of DNA targeting by human LINE-1. Wenxing Jin, Cong Yu, Yan Zhang, Changchang Cao, Tianfan Xia, Ge Song, Zhaokui Cai, Yuanchao Xue, Bing Zhu, 2025-10-09 Science 0 3
visibility_off The aflatoxin B1-induced formamidopyrimidine adduct is repaired by transcription-coupled nucleotide excision repair in human cells D. Laverty, Rachana Tomar, Sophie Erlich, Michael P. Stone, Zachary D. Nagel 2025-09-01 NAR Cancer 0 10
visibility_off The eukaryotic replisome intrinsically generates asymmetric daughter chromatin fibers Bruna V. Eckhardt, Hannah J Richter, Inge Rondeel, Keerthi Renduchintala, Francesca Mattiroli, Vijay Ramani 2025-09-18 bioRxiv 0 3
visibility_off Unravelling the genetics and epigenetics of the ageing tumour microenvironment in cancer. H. Easwaran, A. Weeraratna 2025-09-08 Nature reviews. Cancer 0 32
visibility_off NamiRNA-Enhancer Network: The Changing Era Challenge and Chance of miRNA. Lu Chen, Ying Liang, Hongyan Wei, Mengxing Liu, Jin Wu, Wei Li, Wenxuan Li, Yuxiao Jin, Yinshan Li, Wei Zhao, Min Xiao, Kaicheng Zhou, Shuai Yang, Wenqiang Yu 2025-08-26 Advanced science 0 9
visibility_off Collateral mutagenesis funnels multiple sources of DNA damage into a ubiquitous mutational signature Natanael Spisak, Marc de Manuel, Molly Przeworski 2025-09-01 bioRxiv 0 6
visibility_off [Progress of scRNA-seq technology in nasopharyngeal carcinoma research]. Bin Zheng, Guanqiao Jin 2025-09-01 Lin chuang er bi yan hou tou jing wai ke za zhi = Journal of clinical otorhinolaryngology head and neck surgery 0 0
visibility_off Reassessment of microbial DNA in cancer genomes: addressing contamination controversies Muhammad Shahid Mehmood, Fatima Hajj 2025-10-13 Annals of Medicine & Surgery 0 0
visibility_off Yatein-induced DNA damage of breast cancer cells by interfering with DNA topoisomerase IIα. Yu-Yao Liu, Ya Chen, Qi-Qi Wang, Xi Zhang, Xiao-Xia Ma, Xing-De Wu, Jia Su 2025-08-25 Journal of Asian natural products research 0 2
visibility_off METTL13 Promotes Pre-Leukemic Transformation and the Development of Pediatric Leukemia Sabina Enlund, Chae-eun Lim, Isabella Hoang, Sonali Joshi, Amanda Ramilo Amor, Cecilia Thomsson, Indranil Sinha, Shahrzad Shirazi Fard, Anna Nilsson, Ola Hermanson, Qingfei Jiang, Frida Holm 2025-08-30 bioRxiv 0 8
visibility_off The Escherichia coli replication initiator DnaA is titrated on the chromosome Lorenzo Olivi, Stephan Köstlbacher, C. Ludwig, Mees Langendoen, Nico J. Claassens, Thijs J. G. Ettema, J. van der Oost, P. R. ten Wolde, Johannes Hohlbein, R. Staals 2025-08-21 Nature Communications 0 75
visibility_off Fencing the genome: ubiquitin signaling restricts heterochromatin spread Collin Bakker, Joanna Paulson, Nitika Taneja 2025-08-21 Signal Transduction and Targeted Therapy 0 11
visibility_off An enteropathogenic microbial toxin modulates the breast cancer epigenome resulting in concurrent silencing of tumor suppressor genes Deepak Verma, Deeptashree Nandi, S. Parida, Archisha Saxena, Dipali Sharma 2025-09-26 Breast Cancer Research : BCR 0 21
visibility_off Comprehensive Mutational Landscape of Yeast Mutator Strains Reveals the Genetic Basis of Mutational Signatures in Cancer. Lei Liu, Danyang Sun, Haoxuan Liu 2025-10-06 Molecular biology and evolution 0 1
visibility_off DUX4 at 25: how it emerged from “junk DNA” to become the cause of facioscapulohumeral muscular dystrophy Alexandra Belayew, Alberto L. Rosa, Peter S. Zammit 2025-08-25 Skeletal Muscle 0 2
visibility_off DNA repair helicases: from mechanistic understanding to therapeutic implications Vijay Menon, Susan E. Gueble 2025-10-07 NAR Cancer 0 3
visibility_off DNA damage response profile distinguishes poor-acting gliomas with shared methylome signatures. Nalin Leelatian, Charu Singh, Richard Bouffard, R. Sundaram, Kirsten E Diggins, William Sullivan, Sateja Paradkar, Zeynep E. Erson Omay, B. Mobley, Susan E. Gueble, Juan C Vasquez, R. Bindra 2025-08-27 Neuro-oncology 0 42
visibility_off MNase stratification reveals heterogeneous 5hmC in naive B cells. Michael Hsu, Heng-Yi Chen, Fang-Yun Lay, Qin Ma, Ben Delatte, C. J. Lio 2025-08-28 bioRxiv : the preprint server for biology 0 3
visibility_off Seclidemstat (SP-2577) Induces Transcriptomic Reprogramming and Cytotoxicity in Multiple Fusion–Positive Sarcomas G. Rask, C. Taslim, A. Bayanjargal, Rachel D. Dreher, Matthew V. Cannon, Julia Selich-Anderson, Jesse C. Crow, Aundrietta Duncan, Emily R. Theisen 2025-08-25 Cancer Research Communications 0 17
visibility_off Epigenomic Heterogeneity of Non-Functional Pancreatic Neuroendocrine Tumors Uncovered by Single nucleus and Spatial ATAC Profiling. Dejiang Wang, Xiangjun Di, Fu Gao, Gaocai Li, Liyun Lin, Shujie He, Di Zhang, Junyi Yu Jin, Yuanxin Liang, Michael Cecchini, Jill Lacy, John Kunstman, Pamela Kunz, Jing Du, Yang Liu 2025-09-16 bioRxiv : the preprint server for biology 0 2
visibility_off Investigation of Apurinic/Apyrimidinic Endonuclease 1 Expression Changes in Prostate Cancer Vahid Rouhi, Sanaz Habibi, Sevim Baykal Koca, Hikmet Köseoğlu, Mehmet Güven 2025-08-29 Cerrahpaşa Medical Journal 0 4
visibility_off Abstract B035: Zebrafish modeling predicts clinical outcomes in human acute lymphoblastic leukemia J. R. Allen, L. A. Corchete Sanchez, M. N. Bakr, Miriam Fernández-Lajarín, Alexandra Hazelwood, Nathan Ford, Anna M Lucianò, Alexandra Veloso, Alexander D Weissman, Olivia A Strom, Esther Rheinbay, David M Langenau 2025-09-25 Cancer Research 0 4
visibility_off Epigenetic regulation of chromosomal instability by EZH2 methyltransferase. Yang Bai, Albert S. Agustinus, Shira Yomtoubian, Cem Meydan, Dylan R McNally, Liron Yoffe, Melissa J Hubisz, Marvel Tranquille, Sneha Pramod, Christy Hong, Magdalena L Plasilova, Aakanksha R Kapoor, Arshdeep Singh, Henry G. Withers, Lukas E. Dow, A. Laughney, B. Bhinder, O. Elemento, Ari M Melnick, S. Bakhoum, Vivek Mittal 2025-10-02 Cancer discovery 0 37
visibility_off Abstract A043: Combination Therapeutic Targeting of Chromatin Complexes in Neuroblastoma Melinda Soeung, Kenneth Ross, L. Merickel, S. Salhotra, A. Taillon, A. Basanthakumar, K. Stegmaier 2025-09-25 Cancer Research 0 1
visibility_off Unravelling High Nuclear Genomic Similarity and Mitochondria Linked Epigenetic Divergence in SCNT Derived Buffalo Clones via Long-Read Nanopore Genome Sequencing Meeti Punetha, Dharmendra Kumar, Satish Kumar, Bhavya Maggo, Priya Dahiya, Pradeep Kumar, Rakesh K. Sharma, Yash Pal, P. S. Yadav 2025-09-01 International Journal of Molecular Sciences 0 8
visibility_off Evidence for vitellogenin DNA‐binding in honey bees Gyan Harwood, Vilde Leipart, Chris Elsik, Joseph C F Ng, F. Drabløs, G. Amdam 2025-09-13 Protein Science : A Publication of the Protein Society 0 62
visibility_off Characterization of cis-regulatory elements and functional variants in colorectal cancer using epigenomics and CRISPRi screenings. Zequn Lu, Can Chen, Heng Zhang, Bin Li, Yizhuo Liu, Jiayi Guo, Runying Xu, Ke Shi, Qianying Ma, Ming Zhang, Yimin Cai, Jinyu Huang, Hui Geng, Linyun Fan, Caibo Ning, Yanmin Li, Shuo Chen, W. Tian, Kexin Hu, Haijie Li, Xiaojun Yang, Chaoqun Huang, Yongchang Wei, Xu Zhu, Xiangpan Li, Zhen Xiong, M. Cai, Xiaoyang Wang, Shaokai Zhang, Hongda Chen, M. Dai, Kun Chen, Mingjuan Jin, Meng Jin, Ying Zhu, Jianbo Tian, Xiaoping Miao 2025-08-25 Nature cancer 0 24
visibility_off Mutational Disruption of TP53: A Structural Approach to Understanding Chemoresistance Ali F. Alsulami 2025-09-01 International Journal of Molecular Sciences 0 7
visibility_off MODERN INSIGHTS OF DNA FUNCTION AND HEREDITY: A REVIEW OF MOLECULAR GENETICS AND CRISPR GENE Mariam Fatima, Mariam Fatima¹, Muhammad Haseeb, Anwar Tarar¹, Arooba Maryam², Muhammad Azhar, Ud Din³˒⁴, Ifra Muzaffar¹, H.M. Saif, UR Rahman⁵, Rida Sattar⁶ 2025-08-21 Journal of Medical & Health Sciences Review 0 3
visibility_off Intermediately Methylated Regions in Normal Cells Are Epimutation Hotspots in Cancer Mohamed Mahgoub, Haley Abel, Nidhi Davarapalli, Heidi Struthers, E. Kotnik, Brittany Johnson, Christopher Markovic, C. Fronick, Robert Fulton, Michael P. Meers, David H. Spencer 2025-09-23 bioRxiv 0 66
visibility_off Hemocytes facilitate interclonal cooperation-induced tumor malignancy by hijacking the innate immune system in Drosophila Sihua Zhao, Yifan Guo, Xiaoyu Kuang, Xiaoqin Li, Chenxi Wu, Peng Lin, Qi Xie, Zongzhao Zhai, D. Kong, Xianjue Ma 2025-08-22 The EMBO Journal 0 17
visibility_off Cisplatin-induced WWP1-eccDNA expression contributes to ovarian cancer resistance. Chenyang Lu, Li HAN, Xiaojuan Guo, Ruijuan Du, Hui Zhang, K. Guo, Yun-Fei Tu, Ruifang Li 2025-09-04 Advances in clinical and experimental medicine : official organ Wroclaw Medical University 0 5
visibility_off The lncRNA ELDR suppresses tumorigenicity of AML by interfering with DNA replication and chromatin accessibility. K. Arman, Julie Ross, Eva-Maria Piskor, Luca Lazzari, Virginie Calderon, Gaspard Reulet, Maria Vera, Edlie St Hilaire, Hugo Wurtele, Brian T Wilhelm, T. Möröy 2025-09-08 Blood advances 0 18
visibility_off Epigenetic regulation of bladder cancer in the context of aging Xuewei Liu, Guofeng Ding, Yifan Liu, Xiaoli Yan, Yan Zhao, Hailin Lv, Xiaojuan Xu 2025-08-21 Frontiers in Pharmacology 0 0
visibility_off PRMT5 genetic interactions with DNA double strand break repair genes Hunter J. Bliss, Juliana Tron, Wesley Bush, Renee A. Bouley, Ruben C. Petreaca 2025-10-09 PLOS One 0 8
visibility_off Epigenetic and transcriptional programs define osteosarcoma subtypes and establish targetable vulnerabilities. E. López-Fuentes, Andrew S Clugston, Alex G Lee, L. Sayles, Natalie Sorensen, María V Pons Ventura, Stanley G Leung, Truc Dinh, Marcus R. Breese, E. Sweet-Cordero 2025-10-03 Cancer discovery 0 17
visibility_off Abstract C109: Single-nucleus sequencing reveals a functionally distinct breast tumor microenvironment by ancestral group with implications for disease progression and therapy Alexandra R Harris, Huaitian Liu, Brittany D. Jenkins, Sanna Madan, Tiangen Chang, Tiffany H Dorsey, E. Ruppin, Shahin Sayed, Francis W. Makokha, Gretchen L. Gierach, S. Ambs 2025-09-18 Cancer Epidemiology, Biomarkers & Prevention 0 63
visibility_off Targeted DNA ADP-ribosylation triggers templated repair in bacteria and base mutagenesis in eukaryotes. Darshana Gupta, Constantinos Patinios, H. V. Bassett, A. Kibe, Scott P. Collins, Charlotte Kamm, Yanyan Wang, Chengsong Zhao, Katie Vollen, C. Toussaint, Irene Calvin, G. Cullot, Eric J. Aird, Kathryn M. Polkoff, T. Nguyen-Vo, Angela Migur, Friso T Schut, Ibrahim S. Al’Abri, Tatjana Achmedov, Alessandro Del Re, Jacob E. Corn, A. Saliba, Nathan C. Crook, A. Stepanova, J. M. Alonso, Chase L. Beisel 2025-09-04 Nature biotechnology 0 39
visibility_off Breaking the cancer code: a novel DNA minicircle to disable STAT3 in ovarian cancer cells SKOV3 Adina-Gabriela Vasilescu, Andrei-Mihai Vasilescu, Livia E. Sima, Natalia Baran, S. Szedlacsek 2025-09-15 Frontiers in Pharmacology 0 3
visibility_off Cancer genomic alterations and microenvironmental features encode synergistic interactions with disease outcomes. Masroor Bayati, Zoe P Klein, Alexander T Bahcheli, Mykhaylo Slobodyanyuk, Jeffrey To, Kevin C L Cheng, Jigyansa Mishra, Diogo Pellegrina, K. Guevara-Hoyer, Chris McIntosh, Mamatha Bhat, J. Reimand 2025-09-03 Molecular cancer research : MCR 0 47
visibility_off Enhancer Reprogramming Reveals the Tumorigenic Role of PTPRZ1 in Lung Squamous Cell Carcinoma. Yong-Qiang Ning, Jie Wang, Yihui Zhang, Hongrui Li, Zenan Jiang, Xinyu Su, Xiao Yang, Xiaoxuan Wu, Bing Wei, Jianming Ying, Jian Yan, Wenbin Li 2025-09-03 Advanced science 0 6
visibility_off Endogenous p21 levels protect genomic stability by suppressing both excess and restrained nascent DNA syntheses N. L. Calzetta, S. Mansilla, Candelaria Mares Ahlers, Agostina P. Bertolin, Lilen I. Caimi, Sofía Venerus Arbilla, Jingkun Zeng, Lisa Wiesmüller, V. Gottifredi 2025-10-08 Science Advances 0 29
visibility_off FOXA2 and NKX2-1 Orchestrate Neuroendocrine Lineage Plasticity in Prostate Cancer Ka-wing Fong 2025-10-01 Serican Journal of Medicine 0 0
visibility_off Fluctuating DNA methylation tracks cancer evolution at clinical scale C. Gabbutt, M. Duran-Ferrer, Heather E. Grant, D. Mallo, F. Nadeu, J. Househam, N. Villamor, Madlen Müller, Simon Heath, E. Raineri, O. Krali, J. Nordlund, T. Zenz, I. Gut, E. Campo, A. López-Guillermo, J. Fitzgibbon, C. P. Barnes, D. Shibata, J. Martín-Subero, Trevor A. Graham 2025-09-10 Nature 1 95
visibility_off Abstract B001: Effective targeting p53 mutant pancreatic cancer by novel drug-combination strategy leveraging their DNA damage liabilities A. Bakin, M. Alruwaili, Ashley Guo, T. Melendy, Barbara Foster, C. Fountzilas 2025-09-28 Cancer Research 0 2
visibility_off Transcriptional regulation of gene modules in Epstein-Barr virus. Paul M. Lieberman 2025-09-22 Transcription 0 2
visibility_off DNA damage response signaling in oocytes from an oncofertility perspective. Yunman (Sonia) Song, Jiyang Zhang, Yingnan Bo, Qiang Zhang, So-Youn Kim, Shuo Xiao 2025-09-12 Biology of reproduction 0 2
visibility_off The role of LncRNA SNHG3 in human cancers Jinming Tang, Min Su, Yuhang Xiao, Wei Ou, Wenxiang Wang, Ren-Wang Peng, Zhining Wu 2025-10-03 Discover Oncology 0 15
visibility_off Abstract A045: Cooperation between germline and somatic drivers in childhood cancer: insights from the ZERO cohort N. Fuentes-Bolanos, Dianne Sylvester, Eliza Courtney, Chelsea Mayoh, Meera Warby, Dong Anh Khuong Quang, P. Barahona, Ashleigh Sullivan, A. Altekoester, Megan Rumford, Hetal Dholaria, Marie Wong, Vanessa Tyrrell, Michelle Haber, Katherine Tucker, Mark J. Cowley, D. S. Ziegler, M. Pinese, L. Lau 2025-09-25 Cancer Research 0 40
visibility_off Nanopore sequencing-derived methylation biomarker prediction for methylation-specific PCR in patients with head and neck squamous cell carcinoma Daria Meyer, Anne Hennig, Anna-Bawany Hums, Orlando Guntinas‑Lichius, Martina Schmitz, Manja Marz 2025-09-13 Clinical Epigenetics 0 1
visibility_off Detection of clonal hematopoiesis of indeterminate potential via genome or exome sequencing profoundly underestimates disease associations R. Corty, Y. Pershad, C. Vlasschaert, L. Luo, T. Mack, K. Amancherla, C. Robinson-Cohen, M. Savona, A. G. Bick 2025-08-16 None 0 46
visibility_off Epigenetic control in thyroid cancer: mechanisms and clinical perspective Jiahui Zhang, Shengkai Zheng, Ruiwang Xie, Junsi Zhang, Xiangjin Chen, Sunwang Xu 2025-08-17 Cell Death Discovery 0 17
visibility_off Targeting menin in lysine methyltransferase 2A/nucleophosmin-mutated leukemia: A novel strategy from epigenetic dysregulation to clinical therapy (Review) Junjie Bi, Hongjun Zhou 2025-09-10 Oncology Letters 0 0
visibility_off Epigenetic functions and biomarker potential of PIWI-interacting RNAs in oncogenesis Kldiashvili Ekaterina, Abiatari Ivane, Kekelia Elene, Iordanishvili Saba, Metreveli Tornike, Dumbadze Eter 2025-09-30 BMC Research Notes 0 2
visibility_off Plasmodium telomere maintenance: uncovering the Achilles’ heel for novel antimalarials Theophilus N. Wakai, Dorathy Anzaku, Israel S. Afolabi 2025-09-10 Frontiers in Cellular and Infection Microbiology 0 1
visibility_off DNA methylation and transcription factor-driven immune subtypes in ovarian cancer Jingshu Hu, Mu Su, Zhijun Qin, Jiayu Li, Hengyu Wang, Kexin Chang, Guosheng He, Yan Zhang, Xiuwei Chen 2025-08-28 Discover Oncology 0 3
visibility_off Temporal genomic dynamics shape clinical trajectory in multiple myeloma. F. Maura, Marcella Kaddoura, A. Poos, Linda B. Baughn, B. Ziccheddu, Marc-Andrea Bärtsch, Anthony Cirrincione, K. Maclachlan, M. Chojnacka, B. Diamond, M. Papadimitriou, P. Blaney, L. John, Philipp Reichert, S. Huhn, Dylan C Gagler, Yanming Zhang, Ahmet Dogan, A. Lesokhin, Faith Davies, H. Goldschmidt, Roland Fenk, Katja C. Weisel, E. Mai, N. Korde, Gareth J Morgan, S. Rajkumar, Shaji K. Kumar, S. Usmani, O. Landgren, M. Raab, Niels Weinhold 2025-08-20 Nature genetics 1 116
visibility_off Whole-genome methylation profiling of extracellular vesicle DNA in gastric cancer identifies intercellular communication features Bingqian Lin, Zhenna Jiao, Shouquan Dong, Weikai Yan, Jinting Jiang, Yanfang Du, Xiaocheng Weng, Hongling Wang, Zhiyuan Hu, Yibin Liu, Xiang Zhou 2025-08-29 Nature Communications 0 5
visibility_off RAD51-mediated homologous recombination is a pro-tumour driver pathway. Bernard S. Lopez 2025-09-24 Oncogene 0 6
visibility_off p300/CBP is an essential driver of pathogenic enhancer activity and gene expression in Ewing sarcoma Laura C Godfrey, Brandon Regalado, Sydney R Schweber, Charlie Hatton, Daniela V. Wenge, Yanhe Wen, Meaghan Boileau, Maria Wessels, Jun Qi, Christopher J Ott, K. Stegmaier, Miguel N Rivera, Scott A Armstrong 2025-09-01 EMBO Reports 0 7
visibility_off UNDERSTANDING PATTERNS OF CO-DELETION CDKN2A/B DELETED GBM TO SUPPORT A SYNTHETIC LETHALITY APPROACH TO TREATMENT Tanishi Moitra, Michael Castro, Matt Williams 2025-09-01 Neuro-Oncology 0 0
visibility_off Identification of a novel PRMD16::SKI fusion gene in T-prolymphocytic leukemia M. Brunetti, H. K. Gjelberg, H. Reikvam, F. Micci 2025-08-26 Frontiers in Oncology 0 32
visibility_off Epigenetic Biomarkers for Cervical Cancer Progression: A Scoping Review Efthymios Ladoukakis, Gracia Andriamiadana, Fatema Hajizadah, Lewis G. E. James, Belinda Nedjai 2025-09-26 International Journal of Molecular Sciences 0 1
visibility_off DNA Damage and Repair in Ovarian Cancer: Focus on MicroRNAs Katarzyna D. Arczewska, A. Piekiełko-Witkowska 2025-09-01 Cancers 0 21
visibility_off Constructing synthetic nuclear architectures via transcriptional condensates in a DNA protonucleus Miao Xie, Weixiang Chen, Maria Vonk-de Roy, Andreas Walther 2025-09-10 Nature Communications 0 4
visibility_off Transcriptomic and Clinical Profiling Reveals LGALS3 as a Prognostic Oncogene in Pancreatic Cancer Grazia Scuderi, S. Mijatović, D. Maksimović‐Ivanić, M. Di Rosa, J. Muñóz-Valle, Alexis Missael Vizcaíno-Quirarte, Gian Marco Leone, K. Mangano, P. Fagone, Ferdinando Nicoletti 2025-10-03 Genes 0 43
visibility_off Improved circulating tumor DNA identification for detection of esophageal squamous cell carcinoma by enzymatic methyl sequencing and hybrid neural network Jiangfeng Shen, Yuqi Ren, Ziyong Mao, Qiuxiang Hu, Yilong Wan, Jiangcun Du, Yanting Lai, Shengxiang Shao, Liuqing Zhang, Hao Wu, Jiaxi Li, Sheng Ju, Xin Tong, Jun Zhao, Lei Cao, Deyi Xiong, ChengCheng Xu, Jun-Chi Xu, Dong Jiang 2025-09-26 Scientific Reports 0 8
visibility_off The role of the lysine histone methylase KMT2D in chronic myeloid leukemia Lina Schlemminger, Inga Nagel, I. Vater, Ingolf Cascorbi, Meike Kaehler 2025-09-16 Frontiers in Pharmacology 0 30
visibility_off ASSOCIATION BETWEEN LINE-1 HYPOMETHYLATION IN CANINE MAMMARY TUMOR TISSUES: IMPLICATIONS FOR DIAGNOSIS AND RESEARCH Patrícia A. dos Santos de Carvalho Joaquim, José Guilherme Xavier, M. Lallo, Rodrigo A. Silva 2025-09-24 Revista CPAQV - Centro de Pesquisas Avançadas em Qualidade de Vida 0 12
visibility_off Induction of post-meiotic DNA double-strand breaks by the Pnu1 endonuclease in Schizosaccharomyces pombe. Loïs Mourrain, Tiphanie Cavé, G. Boissonneault 2025-09-03 Molecular biology of the cell 0 20
visibility_off Synthesizing supercoiled circular DNA molecules in vitro Sepideh Rezaei, Monica Moncada-Restrepo, Sophia Leng, Jeremy W. Chambers, Fenfei Leng 2025-09-05 Nucleic Acids Research 0 1
visibility_off Functional characterization of dysregulated LncRNAs in BRCA and CESC highlights their role in cancer prognosis Madhur Sharma, Nidhi Chourasia, Priyanka Priyanka, D. P. Sarkar, A. Nag, Sandeep Saxena 2025-10-01 Scientific Reports 0 22
visibility_off The expression of establishment of cohesion 1 homolog 2 (ESCO2) in tumor cells and its research progress as a therapeutic target Chunmei Lu, Hanchi Wu, Huiyu Wang 2025-10-06 European Journal of Medical Research 0 1
visibility_off Excavation of Molecular Subtypes of Cervical Cancer Based on DNA Methylation Patterns. Yiwei Zhao, Chutong Zhao, Jiyun Zhao, Yuhan Ma, Shunjin Zhang, Yujie Liu, Yuan Wang, Sijia Liu, Yunyan Zhang 2025-09-26 Frontiers in bioscience 0 7
visibility_off CpG Methylation Protects DNA against Ionizing Radiation Leo Sala, Tereza Zápotocká, Jana Šáchová, Václav Olšanský, David Chvatil, François Chevalier, Violaine Vizcaino, Alain Mery, J. Kočišek 2025-08-20 The Journal of Physical Chemistry. B 0 23
visibility_off Characterization of recombinase activity across cellular growth phases M. Gonzalez-Colell, J. Macía 2025-08-25 Scientific Reports 0 1
visibility_off Genetic landscape of DNMT3A R882H reveals mechanism of aberrant oligomerization. Emma M. Garcia, Olivia R Lavidor, Shaunak Raval, Nicholas Z. Lue, Jessica K Liang, Maeve McFadden, Derek D Hwang, Marcanthony U Zepeda, Luke W Chen, Steven A. Carr, Malvina Papanastasiou, Brian B Liau 2025-09-25 bioRxiv : the preprint server for biology 0 19
visibility_off Prognostic impact of gene alterations via homologous recombination DNA repair gene alteration status in pancreatic ductal adenocarcinoma Yusuke Kawanaka, Chiaki Inagaki, Masaki Okura, S. Mitani, T. Takahama, K. Yonesaka, Y. Chiba, Kazuhiko Nakagawa, H. Kawakami, H. Hayashi 2025-08-25 Frontiers in Medicine 0 46
visibility_off LEVERAGING ORGANOID TECHNOLOGIES TO CHARACTERIZE DYNAMIC TUMOR CELL STATES DRIVING TREATMENT RESISTANCE IN PANCREATIC CANCER 2025-08-21 European Journal of Histochemistry 0 0
visibility_off REV1 inhibition enhances trinucleotide repeat mutagenesis. Ava Siegel, Daniel Almstead, Naveen Kothandaraman, Jessica Reich, Erica N. Lamkin, Josh A Victor, Aarzoo Grover, Kanayo Ikeh, Hannah Koval, Andrew Crompton, Hongjun Jang, Hyejin Lee, Roxana Del Rio Guerra, Dmitry M Korzhnev, M. Kyle Hadden, Jiyong Hong, Pei Zhou, Nimrat Chatterjee 2025-09-16 bioRxiv : the preprint server for biology 0 10
visibility_off Size-Dependent Interactions of γH2AX and p53 Proteins with Graphene Quantum Dots Hassan Arif, Sachi Mehta, Isaac Macwan 2025-08-30 Micro 0 1
visibility_off Consistent asymmetry in DNA damage artefacts across target regions in exome sequencing data Tyler D Medina, Declan Bennett, Cathal Seoighe 2025-07-04 NAR Genomics and Bioinformatics 0 2
visibility_off Epigenetic changes by EZH2 inhibition increase translocations in B cells with high AID activity or DNA repair deficiency. Jianli Tao, Luca Alessandri, Alessandro Gasparetto, Lijuan Zhao, Xuefei Zhang, Frederick W Alt, Roberto Chiarle 2025-08-18 Blood 0 8
visibility_off Emergence of PALB2 Reversion Mutations as a Mechanism of Resistance to Niraparib in Breast Cancer: A Case Report. Maako Kawamura, Hiroshi Tada, Hidekazu Shirota, Miki Dobashi, Noriko Takenaga, H. Yasojima, Narumi Harada-Shoji, K. Komine, Kenichi Nakamura, Minoru Miyashita, Hisato Kawakami 2025-10-06 Cancer science 0 16
visibility_off A circRNA promotes esophageal squamous cell carcinoma progression by inhibiting TRIM25-mediated degradation of IGF2BP family members Shuangyan Tan, Yue Ming, Jiawei Guo, Wenrong Liu, Hulin Ma, Yu Liu, Zhijie Xu, A-Lai Gu-Ha, Lunzhi Dai, Yi-Dan Lin, Yong Peng 2025-10-03 Molecular Cancer 0 6
visibility_off A chemical-genetic interaction between PAF1 and ENL/AF9 YEATS inhibition. Paige A. Barta, Leopold Garnar-Wortzel, T. Bishop, Rachel E Hayward, Lauren M. Hargis, James B. Shaum, H. Kwok, Brian B Liau, Benjamin F. Cravatt, Michael A. Erb 2025-09-10 bioRxiv : the preprint server for biology 0 18
visibility_off Thymic epithelial cells amplify epigenetic noise to promote immune tolerance. Noah Gamble, Jason A Caldwell, Joshua McKeever, Caroline Kaiser, Alexandra Bradu, Peyton J. Dooley, Sandy Klemm, William J. Greenleaf, Narutoshi Hibino, Aaron R. Dinner, Andrew S. Koh 2025-08-20 Nature 0 5
visibility_off Comprehensive assessment of homologous recombination deficiency via simultaneous methylation and mutation analysis in epithelial ovarian cancer: implications for PARP inhibitors efficacy Lin Dong, Huanwen Wu, Ning Li, Wenbin Li, Yan Song, Yuanyuan Xiong, Huan Yin, Huan Fang, Rongrong Chen, Xin Yi, Jie Huang, Jianming Ying 2025-10-10 Biomarker Research 0 6
visibility_off Long non-coding RNAs promote colorectal cancer development through other epigenetic modifications Guojuan Wang, Qingqing Ma, Naicheng Zhu, Yuwei Yan, Chen Zhong, Xinlin Hong, Yujuan Lai, Xiudan Chen, Nanxin Li, Wenyan Yu 2025-09-28 Gastroenterology Report 0 2
visibility_off Unravelling the distinct effects of VHL mutations and chromosome 3p loss in clear cell renal cell carcinoma: Implications for prognosis and treatment Xiang Wang, Jian-Rong Li, N. Chowdhury, Lang Wu, Cheng Chao 2025-09-25 Clinical and Translational Medicine 0 0
visibility_off An Autochthonous Model of Lung Cancer Identifies Requirements for Cellular Transformation in the Naked Mole-Rat. A. Shepard, Daniel K Lester, Scott Troutman, Sany Hoxha, Walid T Khaled, E. S. Smith, Thomas J. Park, Rochelle Buffenstein, Dongliang Du, Mingxiang Teng, C. Dengler-Crish, Kenneth Y Tsai, Elsa R Flores, Andrea Ventura, Joseph L. Kissil 2025-09-08 Cancer discovery 0 20
visibility_off Abstract A048: Overcoming clinical resistance to EZH2 inhibition using rational epigenetic combination therapy Helen S. Mueller 2025-09-25 Cancer Research 0 1
visibility_off Multiomic assessments of LNCaP and derived cell strains reveal determinants of prostate cancer pathobiology. Arnab Bose, Armand Bankhead Iii, Ilsa Coleman, Thomas Persse, Wanting Han, Patricia C. Galipeau, B. Hanratty, Tony L. Chu, Jared M. Lucas, Dapei Li, Rabeya Bilkis, P. Itagi, Sajida Hassan, Mallory Beightol, Minjeong Ko, R. Dumpit, Michael C. Haffner, C. Pritchard, G. Ha, Peter S Nelson 2025-09-16 The Journal of clinical investigation 0 22
visibility_off 43AURKA connects NSD1 and SETD2 in an epigenetic axis governing mitotic fidelity in ccRCC R. Dere, Manga Motrapu, Ashley G Boice, Richard Han, Xiaoli Wang, Pratim Chowdhury, Sung Jung, B. V. V. Prasad 2025-10-01 The Oncologist 0 19
visibility_off DNA2 enables growth by restricting recombination-restarted replication. Jessica J R Hudson, Rowin Appanah, David Jones, Kathryn Davidson, Alice M Budden, Alina Vaitsiankova, Kok-Lung Chan, Keith W. Caldecott, Antony M. Carr, Ulrich Rass 2025-09-03 Nature 0 16
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