This page was last updated on 2025-07-14 09:36:12 UTC
Recommendations for the article EcDNA hubs drive cooperative intermolecular oncogene expression
| Abstract | Title | Authors | Publication Date | Journal/ Conference | Citation count | Highest h-index |
|---|---|---|---|---|---|---|
| visibility_off | EagleC: A deep-learning framework for detecting a full range of structural variations from bulk and single-cell contact maps | Xiaotao Wang, Yu Luan, Feng Yue | 2022-06-01 | Science Advances | 62 | 35 |
| visibility_off | ATACAmp: a tool for detecting ecDNA/HSRs from bulk and single-cell ATAC-seq data | Hansen Cheng, Wenhao Ma, Kun Wang, Han Chu, Guangchao Bao, Yu Liao, Yawen Yuan, Yixiong Gou, Liting Dong, Jian Yang, Haoyang Cai | 2023-11-10 | BMC Genomics | 5 | 15 |
| visibility_off | The ultra-sensitive Nodewalk technique identifies stochastic from virtual, population-based enhancer hubs regulating MYC in 3D: Implications for the fitness of cancer cells | Noriyuki Sumida, E. Sifakis, Barbara A. Scholz, Alejandro Fernandez-Woodbridge, N. Kiani, D. Gómez-Cabrero, J Peter Svensson, Jesper N. Tegnér, A. Göndör, Rolf Ohlsson | 2018-03-27 | bioRxiv | 6 | 38 |
| visibility_off | eccDB: a comprehensive repository for eccDNA-mediated chromatin contacts in multi-species | Min Yang, Bo Qiu, Guo-You He, Jianyuan Zhou, Haoming Yu, Yuying Zhang, Yanshang Li, Taisong Li, Jinping Guo, Xuecang Li, Jianjun Xie | 2022-09-23 | bioRxiv | 14 | 13 |
| visibility_off | AmpliconSuite: an end-to-end workflow for analyzing focal amplifications in cancer genomes | J. Luebeck, Edwin Huang, Forrest Kim, T. Liefeld, Bhargavi Dameracharla, Rohil Ahuja, Daniel Schreyer, Gino Prasad, Michał Adamaszek, Rishaan Kenkre, Tushar Agashe, Devika Torvi, Thorin Tabor, M. Giurgiu, Soyeon Kim, Hoon Kim, Peter Bailey, R.G.W. Verhaak, Viraj Deshpande, Michael Reich, P. Mischel, Jill P. Mesirov, V. Bafna | 2024-05-10 | bioRxiv | 3 | 72 |
| visibility_off | EccBase: A high-quality database for exploration and characterization of extrachromosomal circular DNAs in cancer | Haiyang Sun, Xinyi Lu, Lingyun Zou | 2023-04-01 | Computational and Structural Biotechnology Journal | 12 | 9 |
| visibility_off | Genome-wide detection of enhancer-hijacking events from chromatin interaction data in rearranged genomes | Xiaotao Wang, Jie Xu, Baozhen Zhang, Ye Hou, F. Song, Huijue Lyu, Feng Yue | 2021-06-01 | Nature Methods | 102 | 35 |
| visibility_off | Circlehunter: a tool to identify extrachromosomal circular DNA from ATAC-Seq data | Manqiu Yang, Shufan Zhang, Rong Jiang, Shaomu Chen, Moli Huang | 2023-05-22 | Oncogenesis | 12 | 14 |
| visibility_off | eccDNA Atlas: a comprehensive resource of eccDNA catalog | Tengwei Zhong, Wenqing Wang, Houyan Liu, Mao-Hua Zeng, Xinyu Zhao, Zhiyun Guo | 2022-11-08 | bioRxiv | 18 | 11 |
| visibility_off | Map functional insulators with cross-platform Hi-C meta-analysis | Wanying Xu, Jian Cui, Shanshan Zhang, Leina Lu, Xiaoxiao Liu, Yan Li, Fulai Jin | 2025-05-29 | bioRxiv | 0 | 10 |
| Abstract | Title | Authors | Publication Date | Journal/Conference | Citation count | Highest h-index |