This page was last updated on 2026-03-30 10:24:30 UTC
Recommendations for the article EcDNA hubs drive cooperative intermolecular oncogene expression
| Abstract | Title | Authors | Publication Date | Journal/ Conference | Citation count | Highest h-index |
|---|---|---|---|---|---|---|
| visibility_off | High-confidence structural predictions of extrachromosomal DNA with ecDNAInspector | Sophia J. Pribus, Yanding Zhao, Zhicheng Ma, Clemens Weiss, Aziz Khan, Kathleen E. Houlahan, Christina Curtis | 2025-12-02 | bioRxiv | 0 | 18 |
| visibility_off | EagleC: A deep-learning framework for detecting a full range of structural variations from bulk and single-cell contact maps | Xiaotao Wang, Yu Luan, Feng Yue | 2022-06-01 | Science Advances | 76 | 36 |
| visibility_off | ATACAmp: a tool for detecting ecDNA/HSRs from bulk and single-cell ATAC-seq data | Hansen Cheng, Wenhao Ma, Kun Wang, Han Chu, Guangchao Bao, Y. Liao, Yawen Yuan, Yixiong Gou, Liting Dong, Jian Yang, Haoyang Cai | 2023-11-10 | BMC Genomics | 9 | 16 |
| visibility_off | scAmp analyzes focal gene amplifications at single-cell resolution | Matthew G. Jones, Natasha E. Weiser, King L. Hung, Xiaowei Yan, Sangya Agarwal, J. Luebeck, Aditi Gnanasekar, B. Howitt, Ellis J Curtis, Kevin Yu, John C. Rose, Katerina Kraft, Valeh Valiollah Pour Amiri, Leena Satpathy, V. Bafna, P. Mischel, Howard Y. Chang | 2026-02-15 | bioRxiv | 0 | 76 |
| visibility_off | DeepECC: a deep learning framework for genome-wide identification and analysis of human cancer eccDNAs. | Changcheng Wang, Yisen Xu, Rufeng Li, Min Qiang, Chen Guo, Qian He, Xiaokang Wu, Lingmi Hou, Qiuran Xu, Yungang Xu | 2026-02-24 | Nucleic acids research | 0 | 18 |
| visibility_off | eccDB: a comprehensive repository for eccDNA-mediated chromatin contacts in multi-species | Min Yang, Bo Qiu, G. He, Jianyuan Zhou, Haoming Yu, Yuying Zhang, Yanshang Li, Taisong Li, Jinping Guo, Xue-Cang Li, Jianjun Xie | 2022-09-23 | bioRxiv | 18 | 3 |
| visibility_off | AmpliconSuite: an end-to-end workflow for analyzing focal amplifications in cancer genomes | J. Luebeck, Edwin Huang, Forrest Kim, T. Liefeld, Bhargavi Dameracharla, Rohil Ahuja, Daniel Schreyer, Gino Prasad, Michał Adamaszek, R. Kenkre, Tushar Agashe, Devika Torvi, Thorin Tabor, M. Giurgiu, Soyeon Kim, Hoon Kim, Peter Bailey, R.G.W. Verhaak, Viraj Deshpande, Michael Reich, P. Mischel, J. Mesirov, V. Bafna | 2024-05-10 | bioRxiv | 15 | 76 |
| visibility_off | EccBase: A high-quality database for exploration and characterization of extrachromosomal circular DNAs in cancer | Haiyang Sun, Xinyi Lu, Lingyun Zou | 2023-04-01 | Computational and Structural Biotechnology Journal | 17 | 9 |
| visibility_off | Genome-wide detection of enhancer-hijacking events from chromatin interaction data in rearranged genomes | Xiaotao Wang, Jie Xu, Baozhen Zhang, Ye Hou, F. Song, Huijue Lyu, Feng Yue | 2021-06-01 | Nature Methods | 117 | 36 |
| visibility_off | Circlehunter: a tool to identify extrachromosomal circular DNA from ATAC-Seq data | Manqiu Yang, Shufan Zhang, Rong Jiang, Shaomu Chen, Moli Huang | 2023-05-22 | Oncogenesis | 16 | 16 |
| Abstract | Title | Authors | Publication Date | Journal/Conference | Citation count | Highest h-index |