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Recommendations for the article Extrachromosomal DNA in Cancer.
| Abstract | Title | Authors | Publication Date | Journal/ Conference | Citation count | Highest h-index |
|---|---|---|---|---|---|---|
| visibility_off | Methods, bioinformatics tools and databases in ecDNA research: An overview | Xinyu Zhao, Huan Zhao, Yupeng Liu, Zhiyun Guo | 2023-11-01 | Computers in biology and medicine | 10 | 3 |
| visibility_off | High-confidence structural predictions of extrachromosomal DNA with ecDNAInspector | Sophia J. Pribus, Yanding Zhao, Zhicheng Ma, Clemens Weiss, Aziz Khan, Kathleen E. Houlahan, Christina Curtis | 2025-12-02 | bioRxiv | 0 | 18 |
| visibility_off | Machine learning-based extrachromosomal DNA identification in large-scale cohorts reveals its clinical implications in cancer | Shixiang Wang, Chen-Yi Wu, M. He, Jia-Xin Yong, Yanxing Chen, Li-Mei Qian, Jin-Ling Zhang, Zhao-lei Zeng, Rui-Hua Xu, Feng Wang, Qi Zhao | 2024-02-19 | Nature Communications | 25 | 30 |
| visibility_off | Bioinformatics advances in eccDNA identification and analysis | Fuyu Li, Wenlong Ming, Wenxiang Lu, Ying Wang, Xianjun Dong, Yunfei Bai | 2024-08-29 | Oncogene | 9 | 30 |
| visibility_off | Reconstructing the three-dimensional architecture of extrachromosomal DNA with ec3D | Biswanath Chowdhury, Kaiyuan Zhu, Chaohui Li, J. Luebeck, Owen S. Chapman, Katerina Kraft, Shu Zhang, Lukas Chavez, A. Henssen, P. Mischel, Howard Y. Chang, V. Bafna | 2025-05-19 | Nature Communications | 3 | 76 |
| visibility_off | Reconstructing the three-dimensional architecture of extrachromosomal DNA with ec3D | Biswanath Chowdhury, Kaiyuan Zhu, Chaohui Li, J. Luebeck, Owen S. Chapman, Katerina Kraft, Shu Zhang, Lukas Chavez, A. Henssen, P. Mischel, Howard Y. Chang, V. Bafna | 2025-05-19 | Nature Communications | 3 | 76 |
| visibility_off | Characterization, biogenesis model, and current bioinformatics of human extrachromosomal circular DNA | Lina Zhou, Wenyi Tang, B. Ye, Lingyun Zou | 2024-04-29 | Frontiers in Genetics | 1 | 3 |
| visibility_off | Circlehunter: a tool to identify extrachromosomal circular DNA from ATAC-Seq data | Manqiu Yang, Shufan Zhang, Rong Jiang, Shaomu Chen, Moli Huang | 2023-05-22 | Oncogenesis | 16 | 16 |
| visibility_off | Reconstructing the three-dimensional architecture of extrachromosomal DNA with ec3D | Biswanath Chowdhury, Kaiyuan Zhu, Chaohui Li, J. Luebeck, Owen S. Chapman, Katerina Kraft, Shu Zhang, Lukas Chavez, A. Henssen, P. Mischel, Howard Y. Chang, V. Bafna | 2025-05-19 | Nature Communications | 3 | 76 |
| visibility_off | DeepECC: a deep learning framework for genome-wide identification and analysis of human cancer eccDNAs. | Changcheng Wang, Yisen Xu, Rufeng Li, Min Qiang, Chen Guo, Qian He, Xiaokang Wu, Lingmi Hou, Qiuran Xu, Yungang Xu | 2026-02-24 | Nucleic acids research | 0 | 18 |
| Abstract | Title | Authors | Publication Date | Journal/Conference | Citation count | Highest h-index |