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Recommendations for the article Chromothripsis drives the evolution of gene amplification in cancer
| Abstract | Title | Authors | Publication Date | Journal/ Conference | Citation count | Highest h-index |
|---|---|---|---|---|---|---|
| visibility_off | Leveraging AI to automate detection and quantification of extrachromosomal DNA to decode drug responses | Kohen Goble, Aarav Mehta, Damien Guilbaud, Jacob Fessler, Jingting Chen, William Nenad, Christina G. Ford, Oliver Cope, Darby Cheng, William Dennis, Nithya Gurumurthy, Yue Wang, Kriti Shukla, Elizabeth Brunk | 2025-02-03 | Frontiers in Pharmacology | 4 | 4 |
| visibility_off | Cell-cycle dependent DNA repair and replication unifies patterns of chromosome instability | B. Lu, Samuel Winnall, W. Cross, C. P. Barnes | 2024-01-04 | Nature Communications | 3 | 5 |
| visibility_off | Leveraging AI to Automate Detection and Quantification of Extrachromosomal DNA (ecDNA) to Decode Drug Responses | Kohen Goble, Aarav Mehta, Damien Guilbaud, Jacob Fessler, Jingting Chen, William Nenad, Oliver Cope, Darby Cheng, William Dennis, Nithya Gurumurthy, Yue Wang, Kriti Shukla, Elizabeth Brunk | 2024-10-27 | bioRxiv | 0 | 4 |
| visibility_off | Origins of chromosome instability unveiled by coupled imaging and genomics | Marco R. Cosenza, Alice Gaiatto, Büşra Erarslan Uysal, Álvaro Andrades, Nina Luisa Sautter, Marina Šimunović, M. Jendrusch, Sonia Zumalave, Tobias Rausch, A. Halavatyi, Eva-Maria Geissen, Joshua Lucas Eigenmann, Thomas Weber, Patrick Hasenfeld, Eva Benito, Catherine Stober, I. Cortés-Ciriano, A. Kulozik, R. Pepperkok, Jan O. Korbel | 2025-10-29 | Nature | 5 | 43 |
| visibility_off | Tracking ongoing chromosomal instability using single-cell whole-genome sequencing | Bárbara Hernando, Blas Chaves-Urbano, Maria Escobar-Rey, Marina Torres, Alice Cádiz, Ángel Fernández-Sanromán, Sara Barrambana, Carmen G. Lechuga, Carmen Guerra, Mariano Barbacid, David Gómez-Sánchez, F. Sánchez-Vega, P. Razavi, M. García-Pérez, Patricia G. Santamaria, Geoffrey Macintyre | 2025-11-27 | bioRxiv | 0 | 47 |
| visibility_off | Origins of de novo chromosome rearrangements unveiled by coupled imaging and genomics | M. R. Cosenza, Alice Gaiatto, Büşra Erarslan Uysal, Álvaro Andrades Delgado, Nina Luisa Sautter, Michael Jendrusch, Sonia Zumalave Duro, Tobias Rausch, A. Halavatyi, Eva-Maria Geissen, Patrick Hasenfeld, I. Cortés-Ciriano, A. Kulozik, R. Pepperkok, J. Korbel | 2024-08-17 | bioRxiv | 4 | 99 |
| visibility_off | Starfish infers signatures of complex genomic rearrangements across human cancers | Lisui Bao, Xiaoming Zhong, Yang Yang, Lixing Yang | 2022-07-14 | Nature Cancer | 26 | 45 |
| visibility_off | AmpliconReconstructor: Integrated analysis of NGS and optical mapping resolves the complex structures of focal amplifications in cancer | J. Luebeck, C. Coruh, S. R. Dehkordi, Joshua T. Lange, Kristen M. Turner, Viraj Deshpande, Dave A. Pai, Chao Zhang, Utkrisht Rajkumar, Julie A. Law, P. Mischel, V. Bafna | 2020-01-23 | bioRxiv | 1 | 107 |
| visibility_off | Identifying simultaneous rearrangements in cancer genomes | Layla Oesper, S. Dantas, Benjamin J. Raphael | 2017-07-26 | Bioinformatics | 6 | 66 |
| visibility_off | scAmp analyzes focal gene amplifications at single-cell resolution | Matthew G. Jones, Natasha E. Weiser, King L. Hung, Xiaowei Yan, Sangya Agarwal, J. Luebeck, Aditi Gnanasekar, B. Howitt, Ellis J Curtis, Kevin Yu, John C. Rose, Katerina Kraft, Valeh Valiollah Pour Amiri, Leena Satpathy, V. Bafna, P. Mischel, Howard Y. Chang | 2026-02-15 | bioRxiv | 0 | 76 |
| Abstract | Title | Authors | Publication Date | Journal/Conference | Citation count | Highest h-index |